Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16110	BPHYT_RS16115	BPHYT_RS16120	BPHYT_RS16125	BPHYT_RS16130
carbon source	D-Sorbitol (C)	-4.0	-3.8	-3.9	+0.2	+0.2
motility	outer cut, LB soft agar motility assay	-0.3	+0.2	-0.6	-0.1	-1.7
motility	outer cut, LB soft agar motility assay	-0.4	+0.2	-0.6	-0.3	-1.4
nitrogen source	L-Alanine (N)	-0.2	+0.0	-0.3	-0.4	-1.4
nitrogen source	Ammonium chloride (N)	-0.6	-0.0	-0.2	-0.3	-1.2
motility	inner cut, LB soft agar motility assay	-0.1	-0.2	-0.1	+0.1	-1.7
nitrogen source	L-Asparagine (N)	-0.2	+0.0	-0.7	+0.2	-1.5
nitrogen source	Uridine (N)	-0.3	-0.1	-0.4	-0.0	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.0	-0.2	-0.7	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.1	-0.8	-0.4	-0.8
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.2	-0.5	-0.3	-1.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.0	+0.5	+0.2	-2.3
motility	inner cut, LB soft agar motility assay	-0.0	+0.2	-0.6	-0.2	-1.0
motility	outer cut, LB soft agar motility assay	-0.5	+0.1	-0.1	-0.0	-1.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.2	-0.3	-0.1	-1.6
stress	Bacitracin 0.25 mg/ml	+0.3	-0.1	-0.1	-0.3	-1.2
nitrogen source	L-Serine (N)	-0.7	+0.4	-0.1	-0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+0.7	+0.1	-0.5	-0.6
phage	36hr PHYTO11 MOI 1	-0.7	+0.3	+0.4	-0.1	-0.6
phage	24hr PHYTO4 MOI 10	-0.7	+0.3	+0.5	-0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.1	+0.1	-0.2	-1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.0	+0.8	-0.2	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	+0.7	-0.2	-0.8	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.1	+0.6	+0.3	-0.7
phage	36hr PHYTO6 MOI 0.1	-0.5	+0.2	+0.6	+0.3	-0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.1	+1.0	-0.6	-0.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.1	+1.2	-0.1	-0.6
nophagecontrol	24hr Phyto Lib only	-0.3	-0.1	+0.9	-0.3	+0.5
phage	36hr PHYTO6 MOI 10	-0.0	+0.3	+0.6	+0.7	-0.5
carbon source	D-Glucosamine Hydrochloride (C)	-0.2	-0.0	+0.0	+0.4	+1.6