Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS16035	BPHYT_RS16040	BPHYT_RS16045	BPHYT_RS16050	BPHYT_RS16055
carbon source	Malonic (C)	N.D.	N.D.	-0.4	-0.6	-0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.7	-0.6	-0.4
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	N.D.	-0.1	-0.6	-0.9
carbon source	D-Glucose (C)	N.D.	N.D.	-0.0	-0.4	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	N.D.	N.D.	+0.1	-0.8	-0.4
phage	36hr PHYTO10 MOI 10	N.D.	N.D.	+0.2	-0.7	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.4	+0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.2	-0.8	+0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	N.D.	-0.7	-0.8	+0.7
phage	36hr PHYTO11 MOI 0.1	N.D.	N.D.	+0.3	+0.2	-1.0
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	N.D.	-0.2	-0.7	+0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	N.D.	+0.2	-0.9	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.2	-0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.6	-0.0	+0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.5	+0.5	-1.0
carbon source	Tween 20 (C)	N.D.	N.D.	+0.4	+0.6	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	-0.2	+0.9	-0.4
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	N.D.	-0.0	-0.5	+0.9
phage	36hr PHYTO4 MOI 1	N.D.	N.D.	+0.3	-0.4	+0.6
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	N.D.	-0.3	+0.4	+0.6
phage	24hr PHYTO7 MOI 1	N.D.	N.D.	-0.3	+0.3	+0.7
phage	36hr PHYTO3 MOI 1	N.D.	N.D.	+0.4	-0.2	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.1	-0.3	+1.4
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	N.D.	-0.2	+0.6	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.2	+0.4	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	N.D.	+0.1	+0.5	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.6	+0.7	+0.1
carbon source	Xylitol (C)	N.D.	N.D.	+3.8	-2.8	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	+0.6	+0.6	+0.3
nitrogen source	L-Glutamic (N)	N.D.	N.D.	+0.6	+0.1	+1.1