Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS16025 and BPHYT_RS16030 are separated by 28 nucleotidesBPHYT_RS16030 and BPHYT_RS16035 are separated by 10 nucleotidesBPHYT_RS16035 and BPHYT_RS16040 are separated by 852 nucleotidesBPHYT_RS16040 and BPHYT_RS16045 overlap by 4 nucleotides BPHYT_RS16025: BPHYT_RS16025 - Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data), at 3,635,343 to 3,635,981 _RS16025 BPHYT_RS16030: BPHYT_RS16030 - Kynureninase (EC 3.7.1.3) (from data), at 3,636,010 to 3,637,260 _RS16030 BPHYT_RS16035: BPHYT_RS16035 - tryptophan 2,3-dioxygenase, at 3,637,271 to 3,638,203 _RS16035 BPHYT_RS16040: BPHYT_RS16040 - short-chain dehydrogenase, at 3,639,056 to 3,639,793 _RS16040 BPHYT_RS16045: BPHYT_RS16045 - actin, at 3,639,790 to 3,641,334 _RS16045
Group Condition BPHYT_RS16025 BPHYT_RS16030 BPHYT_RS16035 BPHYT_RS16040 BPHYT_RS16045
carbon source L-Tryptophan (C) -5.5 -4.6 N.D. N.D. -0.0
nophagecontrol 24hr Phyto Lib Only -1.9 -0.6 N.D. N.D. -0.0
phage 24hr PHYTO3 MOI 1 -1.3 -0.7 N.D. N.D. -0.3
phage 24hr PHYTO9 MOI 10 -1.2 -1.0 N.D. N.D. -0.2
phage P. phyto PHYTO2 MOI 1 -1.9 -0.2 N.D. N.D. +0.0
phage 24hr PHYTO7 MOI 1 -1.3 -0.4 N.D. N.D. -0.3
phage 24hr PHYTO10 MOI 1 -1.2 -1.1 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 -0.5 N.D. N.D. -0.3
phage 24hr PHYTO MOI 0.1 -1.0 -1.0 N.D. N.D. +0.3
phage 36hr PHYTO11 MOI 1 -1.7 -0.2 N.D. N.D. +0.1
phage 36hr PHYTO8 MOI 0.1 -0.7 -0.6 N.D. N.D. -0.3
phage 24hr PHYTO6 MOI 0.1 -1.1 -0.8 N.D. N.D. +0.4
phage 36hr PHYTO6 MOI 10 -0.9 -0.8 N.D. N.D. +0.2
nophagecontrol 24hr Phyto Lib Only -1.3 -0.4 N.D. N.D. +0.3
phage PHYTO3 MOI 0.1 -1.1 -0.6 N.D. N.D. +0.3
phage 24hr PHYTO10 MOI 10 -0.3 -1.3 N.D. N.D. +0.3
phage P. phyto PHYTO2 MOI 1 -1.5 +0.0 N.D. N.D. +0.3
phage 36hr PHYTO4 MOI 1 -1.1 -0.5 N.D. N.D. +0.3
phage 36hr PHYTO11 MOI 0.1 -1.3 -0.1 N.D. N.D. +0.3
nophagecontrol 36hr Phyto Lib Only -0.7 -0.6 N.D. N.D. +0.3
phage 24hr PHYTO2 MOI 0.1 -0.9 -0.4 N.D. N.D. +0.2
phage 24hr PHYTO3 MOI 0.1 -0.8 -0.6 N.D. N.D. +0.4
phage 24hr PHYTO4 MOI 0.1 -0.5 -0.7 N.D. N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 -0.4 N.D. N.D. -0.7
phage 36hr PHYTO10 MOI 10 -0.6 -0.3 N.D. N.D. +0.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.5 -0.5 N.D. N.D. +0.5
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.7 +0.9 N.D. N.D. -0.7
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.5 +0.7 N.D. N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.7 +0.2 N.D. N.D. +0.6
carbon source Xylitol (C) -0.3 -0.0 N.D. N.D. +3.8
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