Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15970	BPHYT_RS15975	BPHYT_RS15980	BPHYT_RS15985	BPHYT_RS15990
nitrogen source	L-Lysine (N)	N.D.	+0.0	-0.2	-0.5	-0.8
phage	24hr PHYTO6 MOI 10	N.D.	-0.0	-0.5	-0.1	-0.9
phage	PHYTO3 MOI 0.1	N.D.	-0.2	-0.6	+0.0	-0.5
stress	A22 0.005 mg/ml	N.D.	-0.1	-0.3	-0.7	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.4	-0.5	+0.1	-0.4
phage	36hr PHYTO2 MOI 1	N.D.	-0.6	+0.2	+0.2	-0.6
nitrogen source	L-Serine (N)	N.D.	+0.1	-0.4	+0.3	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	+0.3	-0.4	-0.4	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	-0.1	+0.2	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	+0.4	-0.1	-0.6	-0.2
phage	36hr PHYTO3 MOI 1	N.D.	-0.6	+0.3	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	+0.2	-0.6	+0.2
phage	36hr PHYTO3 MOI 1	N.D.	-0.8	+0.4	+0.2	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	-0.6	-0.0	-0.2	+0.6
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	+0.3	+0.1	-0.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.7	-0.1	-0.4	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	+0.1	+0.2	-0.7
nophagecontrol	24hr Phyto Lib only	N.D.	-0.4	-0.2	+0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.6	+0.5	+0.2	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	+1.3	-0.1	-0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.0	-0.0	-0.4	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.2	-0.1	+0.9	-0.1
phage	24hr PHYTO1 MOI 10	N.D.	-0.0	+0.2	+0.7	-0.3
carbon source	2-Deoxy-D-Ribose (C)	N.D.	+0.5	+0.4	-0.3	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	+1.0	-0.0	+0.1	-0.3
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	+0.3	+0.4	-0.1	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	+0.6	-0.0	+0.4	+0.3
vitamin	No vitamins t2	N.D.	+0.1	+0.6	+0.1	+0.5
phage	P. phyto corn MOI 1	N.D.	+0.1	+0.6	+0.3	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	+0.5	+0.8	+0.1