Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS15960 and BPHYT_RS15965 are separated by 17 nucleotidesBPHYT_RS15965 and BPHYT_RS15970 overlap by 19 nucleotidesBPHYT_RS15970 and BPHYT_RS15975 are separated by 57 nucleotidesBPHYT_RS15975 and BPHYT_RS15980 are separated by 179 nucleotides BPHYT_RS15960: BPHYT_RS15960 - iron-sulfur cluster binding protein, at 3,622,251 to 3,623,489 _RS15960 BPHYT_RS15965: BPHYT_RS15965 - hypothetical protein, at 3,623,507 to 3,624,091 _RS15965 BPHYT_RS15970: BPHYT_RS15970 - N-acetylmuramoyl-L-alanine amidase, at 3,624,073 to 3,625,653 _RS15970 BPHYT_RS15975: BPHYT_RS15975 - membrane protein, at 3,625,711 to 3,626,592 _RS15975 BPHYT_RS15980: BPHYT_RS15980 - pirin, at 3,626,772 to 3,627,647 _RS15980
Group Condition BPHYT_RS15960 BPHYT_RS15965 BPHYT_RS15970 BPHYT_RS15975 BPHYT_RS15980
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.4 N.D. N.D. -0.6 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 N.D. N.D. -0.4 -0.5
phage PHYTO3 MOI 0.1 +0.2 N.D. N.D. -0.2 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. N.D. -0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. N.D. -0.3 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.0 N.D. N.D. +0.3 -0.7
nophagecontrol 24hr Phyto Lib only +0.3 N.D. N.D. -0.4 -0.2
phage 24hr PHYTO6 MOI 0.1 +0.4 N.D. N.D. -0.5 -0.3
phage 24hr PHYTO11 MOI 0.1 +0.4 N.D. N.D. -0.4 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.5 N.D. N.D. +0.4 -0.1
phage 24hr PHYTO4 MOI 10 -0.3 N.D. N.D. +0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 N.D. N.D. -0.6 +0.5
phage 36hr PHYTO2 MOI 1 +0.5 N.D. N.D. -0.6 +0.2
phage 36hr PHYTO3 MOI 1 +0.5 N.D. N.D. -0.6 +0.3
phage 36hr PHYTO3 MOI 1 +0.7 N.D. N.D. -0.8 +0.4
phage P. phyto PHYTO2 MOI 1 -0.3 N.D. N.D. +0.4 +0.3
phage 36hr PHYTO11 MOI 1 +0.5 N.D. N.D. -0.4 +0.2
phage 36hr PHYTO1 MOI 1 +0.4 N.D. N.D. -0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 N.D. N.D. +0.7 -0.1
phage 24hr PHYTO9 MOI 10 +0.2 N.D. N.D. -0.3 +0.6
phage 24hr PHYTO3 MOI 1 +0.3 N.D. N.D. -0.2 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.4 N.D. N.D. +0.5 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.4 N.D. N.D. +0.6 -0.1
phage 36hr PHYTO8 MOI 10 +0.3 N.D. N.D. +0.4 +0.2
carbon source 2-Deoxy-D-Ribose (C) +0.1 N.D. N.D. +0.5 +0.4
phage P. phyto corn MOI 0.1 +0.3 N.D. N.D. +0.5 +0.3
nophagecontrol 36hr Phyto Lib only +0.3 N.D. N.D. +0.4 +0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.2 N.D. N.D. +1.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.4 N.D. N.D. +1.0 -0.0
stress Nickel (II) chloride 1 mM +0.9 N.D. N.D. +0.4 +0.3
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BPHYT_RS15960
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BPHYT_RS15965
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BPHYT_RS15975
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BPHYT_RS15980
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