Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS15875 and BPHYT_RS15880 are separated by 149 nucleotidesBPHYT_RS15880 and BPHYT_RS15885 are separated by 208 nucleotidesBPHYT_RS15885 and BPHYT_RS15890 are separated by 271 nucleotidesBPHYT_RS15890 and BPHYT_RS15895 are separated by 125 nucleotides BPHYT_RS15875: BPHYT_RS15875 - hypothetical protein, at 3,605,480 to 3,605,683 _RS15875 BPHYT_RS15880: BPHYT_RS15880 - 3-deoxy-manno-octulosonate cytidylyltransferase 1, at 3,605,833 to 3,606,633 _RS15880 BPHYT_RS15885: BPHYT_RS15885 - adenylate kinase, at 3,606,842 to 3,607,507 _RS15885 BPHYT_RS15890: BPHYT_RS15890 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 3,607,779 to 3,608,537 _RS15890 BPHYT_RS15895: BPHYT_RS15895 - transglutaminase, at 3,608,663 to 3,609,505 _RS15895
Group Condition BPHYT_RS15875 BPHYT_RS15880 BPHYT_RS15885 BPHYT_RS15890 BPHYT_RS15895
carbon source Protocatechuic Acid (C) N.D. N.D. N.D. -4.6 -0.0
nophagecontrol 36hr Phyto Lib only N.D. N.D. N.D. -3.7 -0.4
nophagecontrol 36hr Phyto Lib only N.D. N.D. N.D. -3.7 -0.3
phage 24hr PHYTO3 MOI 10 N.D. N.D. N.D. -4.0 +0.1
phage 36hr PHYTO6 MOI 1 N.D. N.D. N.D. -3.6 -0.1
phage 24hr PHYTO6 MOI 10 N.D. N.D. N.D. -3.6 -0.1
phage 24hr PHYTO2 MOI 0.1 N.D. N.D. N.D. -2.2 -0.7
phage 24hr PHYTO9 MOI 0.1 N.D. N.D. N.D. -2.9 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -2.8 -0.0
phage 24hr PHYTO7 MOI 10 N.D. N.D. N.D. -2.6 -0.0
phage 24hr PHYTO4 MOI 10 N.D. N.D. N.D. -1.8 -0.5
nophagecontrol 24hr Phyto Lib Only N.D. N.D. N.D. -2.3 +0.0
phage 36hr PHYTO7 MOI 1 N.D. N.D. N.D. -2.0 -0.3
phage 36hr PHYTO6 MOI 10 N.D. N.D. N.D. -2.0 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. N.D. N.D. -2.2 +0.1
stress Cobalt chloride 0.25 mM N.D. N.D. N.D. -2.0 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -2.3 +0.3
phage 36hr PHYTO1 MOI 1 N.D. N.D. N.D. -1.3 -0.7
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -2.0 +0.1
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -2.1 +0.1
lb_dap plate control LB_DAP agar plate, outgrowth in LB N.D. N.D. N.D. -1.4 -0.4
phage 36hr PHYTO10 MOI 10 N.D. N.D. N.D. -1.3 -0.5
vitamin With vitamins t1 N.D. N.D. N.D. -1.7 -0.1
carbon source L-Tryptophan (C) N.D. N.D. N.D. -1.5 -0.3
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. N.D. -2.1 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -1.8 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. N.D. N.D. -1.7 +0.5
phage 24hr PHYTO7 MOI 1 N.D. N.D. N.D. +1.6 -0.5
nophagecontrol 24hr Phyto Lib only N.D. N.D. N.D. +1.7 -0.4
phage 24hr PHYTO8 MOI 1 N.D. N.D. N.D. +1.7 -0.3
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