Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS15840 and BPHYT_RS15845 are separated by 243 nucleotidesBPHYT_RS15845 and BPHYT_RS15850 are separated by 109 nucleotidesBPHYT_RS15850 and BPHYT_RS15855 are separated by 260 nucleotidesBPHYT_RS15855 and BPHYT_RS15860 are separated by 391 nucleotides BPHYT_RS15840: BPHYT_RS15840 - Clp protease proteolytic subunit ClpP, at 3,596,284 to 3,596,931 _RS15840 BPHYT_RS15845: BPHYT_RS15845 - hypothetical protein, at 3,597,175 to 3,598,611 _RS15845 BPHYT_RS15850: BPHYT_RS15850 - hypothetical protein, at 3,598,721 to 3,600,511 _RS15850 BPHYT_RS15855: BPHYT_RS15855 - hypothetical protein, at 3,600,772 to 3,601,347 _RS15855 BPHYT_RS15860: BPHYT_RS15860 - superoxide dismutase, at 3,601,739 to 3,602,317 _RS15860
Group Condition BPHYT_RS15840 BPHYT_RS15845 BPHYT_RS15850 BPHYT_RS15855 BPHYT_RS15860
phage 36hr PHYTO10 MOI 10 -0.5 -0.3 +0.0 -0.6 N.D.
nophagecontrol 24hr Phyto Lib only -0.6 -0.4 +0.0 -0.3 N.D.
phage 24hr PHYTO4 MOI 10 -0.8 -0.2 +0.0 -0.4 N.D.
nophagecontrol 24hr Phyto Lib Only -0.3 -0.1 -0.2 -0.5 N.D.
phage 24hr PHYTO3 MOI 10 -0.4 -0.2 -0.0 -0.5 N.D.
phage 24hr PHYTO11 MOI 1 -0.2 -0.4 -0.2 -0.3 N.D.
phage 24hr PHYTO1 MOI 10 -0.4 +0.1 -0.0 -0.7 N.D.
phage P. phyto PHYTO2 MOI 0.1 -0.3 +0.1 -0.2 -0.5 N.D.
phage 24hr PHYTO9 MOI 10 -0.8 +0.2 -0.1 -0.0 N.D.
nitrogen source L-Lysine (N) +0.1 -0.8 +0.0 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -0.6 +0.0 -0.2 N.D.
phage 36hr PHYTO11 MOI 0.1 -0.1 +0.5 -0.2 -0.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.5 +0.3 +0.2 -0.2 N.D.
phage 24hr PHYTO10 MOI 1 -0.5 +0.5 -0.1 -0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.1 -0.4 +0.1 +0.5 N.D.
nophagecontrol 36hr Phyto Lib only +0.3 +0.5 -0.1 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 +0.7 +0.0 +0.0 N.D.
phage 36hr PHYTO8 MOI 10 -0.3 +0.7 +0.1 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.6 +0.2 -0.4 N.D.
phage 36hr PHYTO6 MOI 0.1 +0.1 +0.7 +0.0 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +0.3 +0.4 +0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.3 +0.6 +0.0 +0.5 N.D.
carbon source D,L-Lactate (C) +0.3 +0.4 -0.1 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +0.3 +0.2 +0.5 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.3 +0.3 +0.2 +0.7 N.D.
tn7 efficiency Outgrowth after Tn7 transformation +0.3 +0.4 +0.1 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +0.7 +0.0 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +0.2 +0.2 +0.6 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.6 +0.3 +0.8 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.2 +0.3 +0.6 N.D.
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