Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15800	BPHYT_RS15805	BPHYT_RS15810	BPHYT_RS15815	BPHYT_RS15820
phage	36hr PHYTO2 MOI 1	-0.1	-0.1	-1.3	N.D.	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-1.1	-0.2	-0.5	N.D.	+0.1
phage	36hr PHYTO8 MOI 10	+0.2	-0.4	-1.3	N.D.	-0.0
phage	24hr PHYTO7 MOI 1	+0.2	-0.3	-0.9	N.D.	-0.4
phage	36hr PHYTO1 MOI 10	-0.6	-0.0	-0.9	N.D.	+0.1
phage	24hr PHYTO4 MOI 10	+0.5	+0.2	-1.8	N.D.	-0.3
carbon source	Gly-Glu (C)	-0.9	+0.2	-0.5	N.D.	-0.1
carbon source	adipate (C)	-1.5	+0.1	+0.4	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	+0.5	-0.2	N.D.	-0.0
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-1.3	+0.3	+0.4	N.D.	-0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	-0.1	+0.8	N.D.	-0.0
carbon source	Dodecandioic (C)	-0.9	+0.1	+0.8	N.D.	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.5	+0.4	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	+0.3	+0.7	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	+0.0	+0.9	N.D.	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.7	-0.6	+0.3	N.D.	-0.1
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-0.7	+0.2	+0.9	N.D.	-0.1
phage	36hr PHYTO6 MOI 10	+0.9	+0.2	-0.5	N.D.	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+1.2	-0.0	-0.6	N.D.	-0.1
phage	36hr PHYTO9 MOI 1	+1.0	+0.1	-0.4	N.D.	-0.1
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-0.6	+0.2	+1.1	N.D.	-0.1
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.4	+1.0	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.2	+1.2	N.D.	-0.1
carbon source	D-Fructose (C)	+1.3	+0.1	-0.3	N.D.	+0.1
phage	36hr PHYTO6 MOI 0.1	+1.3	+0.0	+0.1	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.1	+1.8	N.D.	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.6	+0.2	+0.8	N.D.	+0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.5	+0.3	+0.6	N.D.	+0.6
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+1.4	+0.4	+0.4	N.D.	-0.2
carbon source	D-Glucosamine Hydrochloride (C)	+7.0	-1.2	-1.2	N.D.	-0.4