Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15785	BPHYT_RS15790	BPHYT_RS15795	BPHYT_RS15800	BPHYT_RS15805
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	-0.5	-1.0	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	N.D.	-0.1	-1.1	-0.2
carbon source	adipate (C)	N.D.	N.D.	-0.0	-1.5	+0.1
r2a control	R2A control	N.D.	N.D.	-0.3	-0.8	-0.2
phage	36hr PHYTO11 MOI 0.1	N.D.	N.D.	-0.5	-0.3	-0.5
carbon source	Gly-Glu (C)	N.D.	N.D.	-0.2	-0.9	+0.2
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	N.D.	+0.0	-1.3	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.2	-1.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.2	-0.9	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.2	-0.9	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.3	-0.7	+0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	N.D.	+0.3	-0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.2	-0.6	+0.4
carbon source	Dodecandioic (C)	N.D.	N.D.	+0.5	-0.9	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.0	-0.7	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.6	-0.8	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	-0.3	+0.7	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.1	+0.8	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.7	-0.6	+0.3
phage	24hr PHYTO6 MOI 1	N.D.	N.D.	-0.3	+1.0	-0.2
nutrient	Min media with glucose	N.D.	N.D.	+0.0	+1.0	-0.4
carbon source	D-Glucose 20 mM (C)	N.D.	N.D.	-0.1	+0.9	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.1	+1.1	-0.0
phage	36hr PHYTO6 MOI 0.1	N.D.	N.D.	-0.1	+1.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	+0.9	+0.3	-0.0
carbon source	D-Fructose (C)	N.D.	N.D.	-0.2	+1.3	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.1	+1.2	-0.0
phage	24hr PHYTO8 MOI 1	N.D.	N.D.	+0.4	+0.9	+0.1
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	N.D.	+0.7	+1.4	+0.4
carbon source	D-Glucosamine Hydrochloride (C)	N.D.	N.D.	-1.7	+7.0	-1.2