Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS15655 and BPHYT_RS15660 are separated by 202 nucleotidesBPHYT_RS15660 and BPHYT_RS15665 are separated by 99 nucleotidesBPHYT_RS15665 and BPHYT_RS15670 overlap by 4 nucleotidesBPHYT_RS15670 and BPHYT_RS15675 are separated by 117 nucleotides BPHYT_RS15655: BPHYT_RS15655 - aminotransferase, at 3,549,639 to 3,550,835 _RS15655 BPHYT_RS15660: BPHYT_RS15660 - mechanosensitive ion channel protein MscS, at 3,551,038 to 3,552,369 _RS15660 BPHYT_RS15665: BPHYT_RS15665 - SAM-dependent methyltransferase, at 3,552,469 to 3,553,728 _RS15665 BPHYT_RS15670: BPHYT_RS15670 - phosphoribosylglycinamide formyltransferase, at 3,553,725 to 3,554,378 _RS15670 BPHYT_RS15675: BPHYT_RS15675 - riboflavin kinase, at 3,554,496 to 3,555,491 _RS15675
Group Condition BPHYT_RS15655 BPHYT_RS15660 BPHYT_RS15665 BPHYT_RS15670 BPHYT_RS15675
nitrogen source L-Asparagine (N) N.D. -0.0 N.D. -5.2 N.D.
carbon source Tween 20 (C) N.D. +0.3 N.D. -5.3 N.D.
vitamin With vitamins t2 N.D. +0.2 N.D. -4.8 N.D.
nitrogen source L-Glutamine (N) N.D. -0.1 N.D. -4.6 N.D.
nitrogen source L-Proline (N) N.D. -0.1 N.D. -4.1 N.D.
vitamin No vitamins t2 N.D. +0.0 N.D. -4.0 N.D.
nitrogen source L-Glutamic (N) N.D. -0.5 N.D. -3.4 N.D.
nitrogen source Ammonium chloride (N) N.D. -0.2 N.D. -3.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -0.3 N.D. -3.2 N.D.
carbon source L-Proline (C) N.D. +0.2 N.D. -3.6 N.D.
carbon source Sebacic (C) N.D. -0.0 N.D. -3.2 N.D.
carbon source Protocatechuic Acid (C) N.D. -0.1 N.D. -3.0 N.D.
carbon source Phenylacetic 5 mM (C) N.D. +0.0 N.D. -3.2 N.D.
carbon source Azelaic (C) N.D. +0.2 N.D. -3.3 N.D.
carbon source Protocatechuic Acid (C) N.D. -0.2 N.D. -2.8 N.D.
carbon source Sebacic (C) N.D. -0.0 N.D. -3.0 N.D.
carbon source Phenylacetic 5 mM (C) N.D. -0.2 N.D. -2.7 N.D.
carbon source succinate (C) N.D. +0.2 N.D. -3.0 N.D.
carbon source Dodecandioic (C) N.D. +0.3 N.D. -3.0 N.D.
carbon source D-Glucose (C) N.D. -0.1 N.D. -2.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +0.0 N.D. -2.8 N.D.
carbon source L-Malic (C) N.D. -0.0 N.D. -2.6 N.D.
nutrient casaminos N.D. -0.2 N.D. -2.4 N.D.
carbon source D-Xylose (C) N.D. -0.2 N.D. -2.3 N.D.
carbon source Xylitol (C) N.D. -0.0 N.D. -2.4 N.D.
carbon source L-Lactate (C) N.D. -0.1 N.D. -2.3 N.D.
carbon source D-Galacturonic Acid (C) N.D. +0.0 N.D. -2.4 N.D.
carbon source D,L-Lactate (C) N.D. +0.1 N.D. -2.4 N.D.
nitrogen source L-Citrulline (N) N.D. +0.1 N.D. -2.4 N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. +0.3 N.D. -2.1 N.D.
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