Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS15645 and BPHYT_RS15650 overlap by 1 nucleotidesBPHYT_RS15650 and BPHYT_RS15655 are separated by 130 nucleotidesBPHYT_RS15655 and BPHYT_RS15660 are separated by 202 nucleotidesBPHYT_RS15660 and BPHYT_RS15665 are separated by 99 nucleotides BPHYT_RS15645: BPHYT_RS15645 - nicotinate-nucleotide pyrophosphorylase, at 3,547,470 to 3,548,369 _RS15645 BPHYT_RS15650: BPHYT_RS15650 - quinolinate synthetase, at 3,548,369 to 3,549,508 _RS15650 BPHYT_RS15655: BPHYT_RS15655 - aminotransferase, at 3,549,639 to 3,550,835 _RS15655 BPHYT_RS15660: BPHYT_RS15660 - mechanosensitive ion channel protein MscS, at 3,551,038 to 3,552,369 _RS15660 BPHYT_RS15665: BPHYT_RS15665 - SAM-dependent methyltransferase, at 3,552,469 to 3,553,728 _RS15665
Group Condition BPHYT_RS15645 BPHYT_RS15650 BPHYT_RS15655 BPHYT_RS15660 BPHYT_RS15665
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -4.7 -4.7 N.D. -0.3 N.D.
vitamin No vitamins t2 -4.1 -5.3 N.D. +0.0 N.D.
carbon source Protocatechuic Acid (C) -4.2 -4.1 N.D. -0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -3.4 -4.7 N.D. -0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -4.1 -3.7 N.D. +0.0 N.D.
carbon source propionate (C) -3.8 -3.0 N.D. +0.2 N.D.
carbon source Sebacic (C) -3.7 -2.2 N.D. -0.0 N.D.
carbon source Dodecandioic (C) -3.1 -2.8 N.D. +0.3 N.D.
vitamin No vitamins t1 -2.3 -3.3 N.D. +0.1 N.D.
carbon source D-Xylose (C) -2.5 -2.8 N.D. -0.2 N.D.
carbon source Azelaic (C) -2.6 -2.5 N.D. +0.2 N.D.
supernatant control Vogels_fungal_media 0.1X -2.4 -2.5 N.D. -0.1 N.D.
supernatant control Vogels_fungal_media 0.1X -1.8 -3.1 N.D. +0.0 N.D.
carbon source succinate (C) -2.4 -2.3 N.D. +0.1 N.D.
supernatant control Vogels_fungal_media; pH 5.5 -1.5 -2.8 N.D. -0.1 N.D.
carbon source Protocatechuic Acid (C) -1.5 -2.4 N.D. -0.1 N.D.
carbon source Malonic (C) -1.8 -2.0 N.D. -0.1 N.D.
carbon source D-Ribose (C) -2.0 -2.0 N.D. +0.1 N.D.
nitrogen source Putrescine (N) -1.7 -2.0 N.D. -0.1 N.D.
carbon source Sebacic (C) -1.7 -2.0 N.D. -0.0 N.D.
nitrogen source L-Lysine (N) -1.5 -1.7 N.D. -0.5 N.D.
carbon source L-Histidine (C) -1.9 -1.8 N.D. +0.2 N.D.
carbon source L-Arginine (C) -1.7 -1.4 N.D. -0.3 N.D.
carbon source D-Glucose (C) -1.7 -1.7 N.D. +0.2 N.D.
carbon source Xylitol (C) -1.6 -1.5 N.D. -0.0 N.D.
carbon source L-Fucose (C) -1.6 -1.3 N.D. -0.1 N.D.
carbon source Trisodium citrate (C) -1.5 -1.3 N.D. -0.2 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.6 -1.6 N.D. +0.3 N.D.
carbon source D-Glucose 20 mM (C) -1.4 -1.6 N.D. +0.1 N.D.
carbon source D-Glucose 20 mM (C) -1.3 -1.6 N.D. +0.2 N.D.
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