Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15605	BPHYT_RS15610	BPHYT_RS15615	BPHYT_RS15620	BPHYT_RS15625
carbon source	L-Proline (C)	-5.0	-2.7	-1.0	-3.0	-0.2
nitrogen source	L-Proline (N)	-3.5	-2.6	-1.8	-2.6	+0.3
carbon source	L-Glutamine (C)	-2.2	-1.6	-1.6	-4.6	-0.0
carbon source	L-Asparagine (C)	-2.7	-2.2	-1.4	-1.7	-0.0
nitrogen source	L-Lysine (N)	-2.2	-0.8	-2.0	-2.5	-0.1
carbon source	L-Tryptophan (C)	-1.1	-0.5	-1.5	-3.7	-0.2
carbon source	Tween 20 (C)	-0.1	-0.4	-0.6	-6.0	+0.2
nitrogen source	L-Glutamine (N)	-0.2	-0.2	-2.0	-4.1	-0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.6	-0.4	-1.8	-3.1	+0.4
carbon source	Protocatechuic Acid (C)	-0.2	+0.0	-1.4	-4.7	-0.0
pH	LB, pH4	+0.1	+0.0	-2.0	-4.5	+0.1
carbon source	L-Histidine (C)	-1.2	-0.9	-1.1	-2.6	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.1	-1.6	-4.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	-0.1	-1.4	-4.1	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.3	-0.3	-1.4	-3.8	-0.0
carbon source	L-Phenylalanine (C)	-0.5	-0.3	-1.3	-3.7	+0.1
pH	LB, pH4	+0.1	+0.1	-2.0	-4.1	+0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.9	-0.2	-1.7	-2.4	-0.3
nitrogen source	L-Phenylalanine (N)	-1.5	-0.9	-0.3	-3.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.1	-0.7	-4.9	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-0.1	-0.9	-3.7	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.0	-1.1	-4.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.0	-1.2	-3.7	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.1	-0.3	-4.8	+0.3
motility	inner cut, LB soft agar motility assay	-0.1	+0.1	-2.2	-2.8	+0.2
carbon source	Sebacic (C)	+0.0	-0.1	+0.4	-4.8	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	-0.3	+1.1	-4.0	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.0	-0.1	-4.6	+0.8
carbon source	Disodium Glutarate (C)	-0.2	-0.0	+0.3	+5.2	-0.0
carbon source	Disodium Glutarate (C)	-0.1	-0.2	+0.3	+5.4	+0.1