Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS15590	BPHYT_RS15595	BPHYT_RS15600	BPHYT_RS15605	BPHYT_RS15610
carbon source	L-Proline (C)	-4.2	-4.0	-4.7	-5.0	-2.7
nitrogen source	L-Proline (N)	-4.4	-3.0	-4.0	-3.5	-2.6
carbon source	L-Asparagine (C)	-3.1	-2.8	-3.0	-2.7	-2.2
carbon source	L-Glutamine (C)	-2.9	-2.8	-2.4	-2.2	-1.6
nitrogen source	L-Lysine (N)	-2.2	-3.4	-2.2	-2.2	-0.8
nitrogen source	L-Phenylalanine (N)	-1.1	-2.1	-1.8	-1.5	-0.9
carbon source	L-Histidine (C)	-1.6	-1.4	-1.2	-1.2	-0.9
nitrogen source	L-Isoleucine (N)	-1.5	-1.0	-1.8	-1.2	-0.8
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.2	-1.7	-1.2	-1.6	-0.4
stress	Benzethonium chloride 0.0016 mM	-1.1	-1.7	-1.4	-1.5	-0.0
carbon source	D-Alanine (C)	-1.1	-1.3	-1.3	-1.1	-0.7
carbon source	L-Tryptophan (C)	-1.0	-1.2	-1.2	-1.1	-0.5
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-1.5	-1.0	-1.3	-0.9	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-1.1	-0.8	-1.1	-1.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-1.1	-1.1	-0.9	-1.0	-0.4
nitrogen source	L-Glutamic (N)	-0.8	-1.2	-0.8	-0.8	-0.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.6	-0.9	-1.2	-1.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-1.0	-0.8	-0.6	-0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.7	-0.7	-0.7	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-1.0	-0.7	-0.7	-0.2	-0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.7	-0.6	-1.2	-0.7	+0.3
nitrogen source	D-Alanine (N)	-0.8	-0.6	-0.5	-0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.3	-0.4	-0.6	-0.6
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	-0.6	-0.4	-0.4	-0.2
carbon source	L-Phenylalanine (C)	-0.5	-0.4	-0.7	-0.5	-0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.5	-0.7	-0.9	-0.5	+0.2
nitrogen source	L-Serine (N)	-0.6	-0.7	-0.3	-0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.3	-0.5	-0.5	-0.4
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.7	-0.5	-0.3	+0.0
nitrogen source	L-Citrulline (N)	+0.4	+0.9	+0.6	+0.7	+0.1