Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS15565 and BPHYT_RS15570 are separated by 156 nucleotidesBPHYT_RS15570 and BPHYT_RS15575 are separated by 109 nucleotidesBPHYT_RS15575 and BPHYT_RS15580 are separated by 360 nucleotidesBPHYT_RS15580 and BPHYT_RS15585 are separated by 18 nucleotides BPHYT_RS15565: BPHYT_RS15565 - membrane protein, at 3,532,270 to 3,532,458 _RS15565 BPHYT_RS15570: BPHYT_RS15570 - NAD-dependent dehydratase, at 3,532,615 to 3,533,640 _RS15570 BPHYT_RS15575: BPHYT_RS15575 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 3,533,750 to 3,534,781 _RS15575 BPHYT_RS15580: BPHYT_RS15580 - acetylornithine aminotransferase, at 3,535,142 to 3,536,326 _RS15580 BPHYT_RS15585: BPHYT_RS15585 - acetyltransferase, at 3,536,345 to 3,536,815 _RS15585
Group Condition BPHYT_RS15565 BPHYT_RS15570 BPHYT_RS15575 BPHYT_RS15580 BPHYT_RS15585
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.2 -7.4 -0.1 +0.1 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.5 -6.5 +0.5 -0.1 -0.4
carbon source Protocatechuic Acid (C) +0.3 -3.3 -0.4 -0.2 -0.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.3 -4.9 -0.0 +0.2 +0.5
carbon source Protocatechuic Acid (C) -0.1 -2.6 -0.4 -0.4 -0.1
nitrogen source L-Asparagine (N) -0.2 -1.1 -0.4 -0.8 -0.0
nitrogen source L-Glutamic (N) -0.1 -1.2 -0.1 +0.2 -1.1
nutrient L-Serine -0.1 -1.6 -0.0 +0.1 -0.6
carbon source L-Glutamine (C) -0.4 -0.8 -0.6 +0.3 -0.6
vitamin No vitamins t2 -0.1 -1.3 +0.2 -0.8 -0.1
carbon source D-Glucose (C) -0.4 -1.4 +0.2 -0.5 +0.1
nitrogen source NAG (N) -1.1 -0.9 -0.5 +0.3 +0.2
stress Bacitracin 0.25 mg/ml -0.2 -0.1 -1.9 +0.3 +0.1
nutrient L-Histidine -0.0 -2.1 -0.2 +0.2 +0.4
supernatant control Vogels_fungal_media; pH 5.5 -0.3 -1.9 +0.0 +0.6 -0.1
vitamin No vitamins t1 +0.3 -1.4 +0.3 -0.1 -0.6
phage 36hr PHYTO4 MOI 1 -2.1 +0.0 +0.1 +0.2 +0.3
nutrient L-Serine +0.3 -1.4 -0.3 -0.2 +0.2
motility inner cut, LB soft agar motility assay -0.7 -0.1 -0.9 +0.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -1.6 -0.1 +0.1 +1.3
carbon source D-Glucose (C) -0.3 -1.4 +0.1 +0.1 +0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -0.7 -0.1 -0.3 +1.5
carbon source Malonic (C) -0.5 -0.9 -0.1 +0.2 +0.8
nitrogen source L-Lysine (N) +0.6 -0.9 -0.4 +0.3 +0.4
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.8 -1.5 -0.5 -0.2 +1.4
carbon source Sebacic (C) +0.8 -0.7 +0.5 -0.4 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.9 +0.1 -0.2 -0.8
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.7 -0.2 -0.9 +0.1 +0.9
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 +0.3 +1.4 -0.1 -0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 -0.8 +1.1 +0.4 +0.9
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