Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15565	BPHYT_RS15570	BPHYT_RS15575	BPHYT_RS15580	BPHYT_RS15585
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.2	-7.4	-0.1	+0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.5	-6.5	+0.5	-0.1	-0.4
carbon source	Protocatechuic Acid (C)	+0.3	-3.3	-0.4	-0.2	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.3	-4.9	-0.0	+0.2	+0.5
carbon source	Protocatechuic Acid (C)	-0.1	-2.6	-0.4	-0.4	-0.1
nitrogen source	L-Asparagine (N)	-0.2	-1.1	-0.4	-0.8	-0.0
nitrogen source	L-Glutamic (N)	-0.1	-1.2	-0.1	+0.2	-1.1
nutrient	L-Serine	-0.1	-1.6	-0.0	+0.1	-0.6
carbon source	L-Glutamine (C)	-0.4	-0.8	-0.6	+0.3	-0.6
vitamin	No vitamins t2	-0.1	-1.3	+0.2	-0.8	-0.1
carbon source	D-Glucose (C)	-0.4	-1.4	+0.2	-0.5	+0.1
nitrogen source	NAG (N)	-1.1	-0.9	-0.5	+0.3	+0.2
stress	Bacitracin 0.25 mg/ml	-0.2	-0.1	-1.9	+0.3	+0.1
nutrient	L-Histidine	-0.0	-2.1	-0.2	+0.2	+0.4
supernatant control	Vogels_fungal_media; pH 5.5	-0.3	-1.9	+0.0	+0.6	-0.1
vitamin	No vitamins t1	+0.3	-1.4	+0.3	-0.1	-0.6
phage	36hr PHYTO4 MOI 1	-2.1	+0.0	+0.1	+0.2	+0.3
nutrient	L-Serine	+0.3	-1.4	-0.3	-0.2	+0.2
motility	inner cut, LB soft agar motility assay	-0.7	-0.1	-0.9	+0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-1.6	-0.1	+0.1	+1.3
carbon source	D-Glucose (C)	-0.3	-1.4	+0.1	+0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.7	-0.1	-0.3	+1.5
carbon source	Malonic (C)	-0.5	-0.9	-0.1	+0.2	+0.8
nitrogen source	L-Lysine (N)	+0.6	-0.9	-0.4	+0.3	+0.4
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.8	-1.5	-0.5	-0.2	+1.4
carbon source	Sebacic (C)	+0.8	-0.7	+0.5	-0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.9	+0.1	-0.2	-0.8
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.7	-0.2	-0.9	+0.1	+0.9
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.3	+0.3	+1.4	-0.1	-0.3
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.2	-0.8	+1.1	+0.4	+0.9