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Protein
Homologs
Fitness for 5 genes in
Burkholderia phytofirmans PsJN
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BPHYT_RS15565 and BPHYT_RS15570 are separated by 156 nucleotides
BPHYT_RS15570 and BPHYT_RS15575 are separated by 109 nucleotides
BPHYT_RS15575 and BPHYT_RS15580 are separated by 360 nucleotides
BPHYT_RS15580 and BPHYT_RS15585 are separated by 18 nucleotides
BPHYT_RS15565: BPHYT_RS15565 - membrane protein, at 3,532,270 to 3,532,458
_RS15565
BPHYT_RS15570: BPHYT_RS15570 - NAD-dependent dehydratase, at 3,532,615 to 3,533,640
_RS15570
BPHYT_RS15575: BPHYT_RS15575 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 3,533,750 to 3,534,781
_RS15575
BPHYT_RS15580: BPHYT_RS15580 - acetylornithine aminotransferase, at 3,535,142 to 3,536,326
_RS15580
BPHYT_RS15585: BPHYT_RS15585 - acetyltransferase, at 3,536,345 to 3,536,815
_RS15585
Group
Condition
BPHYT
_RS15565
BPHYT
_RS15570
BPHYT
_RS15575
BPHYT
_RS15580
BPHYT
_RS15585
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
-0.2
-7.4
-0.1
+0.1
+0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
+0.5
-6.5
+0.5
-0.1
-0.4
carbon source
Protocatechuic Acid (C)
+0.3
-3.3
-0.4
-0.2
-0.7
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
+0.3
-4.9
-0.0
+0.2
+0.5
carbon source
Protocatechuic Acid (C)
-0.1
-2.6
-0.4
-0.4
-0.1
nitrogen source
L-Asparagine (N)
-0.2
-1.1
-0.4
-0.8
-0.0
nitrogen source
L-Glutamic (N)
-0.1
-1.2
-0.1
+0.2
-1.1
nutrient
L-Serine
-0.1
-1.6
-0.0
+0.1
-0.6
carbon source
L-Glutamine (C)
-0.4
-0.8
-0.6
+0.3
-0.6
vitamin
No vitamins t2
-0.1
-1.3
+0.2
-0.8
-0.1
carbon source
D-Glucose (C)
-0.4
-1.4
+0.2
-0.5
+0.1
nitrogen source
NAG (N)
-1.1
-0.9
-0.5
+0.3
+0.2
stress
Bacitracin 0.25 mg/ml
-0.2
-0.1
-1.9
+0.3
+0.1
nutrient
L-Histidine
-0.0
-2.1
-0.2
+0.2
+0.4
supernatant control
Vogels_fungal_media; pH 5.5
-0.3
-1.9
+0.0
+0.6
-0.1
vitamin
No vitamins t1
+0.3
-1.4
+0.3
-0.1
-0.6
phage
36hr PHYTO4 MOI 1
-2.1
+0.0
+0.1
+0.2
+0.3
nutrient
L-Serine
+0.3
-1.4
-0.3
-0.2
+0.2
motility
inner cut, LB soft agar motility assay
-0.7
-0.1
-0.9
+0.2
+0.6
in planta
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
-0.6
-1.6
-0.1
+0.1
+1.3
carbon source
D-Glucose (C)
-0.3
-1.4
+0.1
+0.1
+0.8
in planta
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
-0.8
-0.7
-0.1
-0.3
+1.5
carbon source
Malonic (C)
-0.5
-0.9
-0.1
+0.2
+0.8
nitrogen source
L-Lysine (N)
+0.6
-0.9
-0.4
+0.3
+0.4
in planta
Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
+0.8
-1.5
-0.5
-0.2
+1.4
carbon source
Sebacic (C)
+0.8
-0.7
+0.5
-0.4
+0.1
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
+0.5
+0.9
+0.1
-0.2
-0.8
in planta
Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
+0.7
-0.2
-0.9
+0.1
+0.9
carbon source
Deoxyribonucleic from herring sperm 10 mg/mL (C)
-0.3
+0.3
+1.4
-0.1
-0.3
carbon source
2-Deoxyadenosine 5-monophosphate 5 mM (C)
+0.2
-0.8
+1.1
+0.4
+0.9
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