Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15540	BPHYT_RS15545	BPHYT_RS15550	BPHYT_RS15555	BPHYT_RS15560
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	-4.2	-1.1	-0.0	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.2	-1.1	-1.0	-0.1	-0.2
carbon source	Phenylacetic 5 mM (C)	-0.9	-0.6	+0.1	-0.0	-0.4
supernatant control	Vogels_fungal_media; pH 5.5	+0.3	-0.1	-1.5	-0.2	-0.3
phage	P. phyto PHYTO2 MOI 1	-0.4	-1.0	+0.0	+0.1	-0.3
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.2	-0.9	-0.4	+0.3	-0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.4	-0.4	-0.6	+0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.0	-1.2	+0.4	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.5	-0.6	+0.2	+0.3
temperature	LB, 23C	-0.2	-1.0	+0.2	+0.1	+0.3
temperature	LB, 30C	-0.1	-0.9	+0.4	+0.0	+0.3
nitrogen source	L-Glutamic (N)	+0.5	+0.8	-1.5	+0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.1	+0.1	-1.0	+0.5	+0.1
phage	36hr PHYTO4 MOI 1	-0.5	+0.9	-0.2	-0.0	-0.0
nitrogen source	Ammonium chloride (N)	-0.0	+1.0	-0.6	-0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.5	+1.0	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.2	+1.1	-0.0	-0.2
carbon source	Suberic (C)	+0.2	-0.5	+0.8	-0.0	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.5	-0.6	+0.8	-0.2	+0.4
carbon source	Protocatechuic Acid (C)	-0.3	-0.1	+0.9	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.7	-0.4	+0.3	+0.6
phage	36hr PHYTO6 MOI 10	-0.3	+0.7	+0.4	+0.1	+0.2
carbon source	Tween 20 (C)	-0.2	+1.0	+0.6	+0.0	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.6	+0.3	+0.2	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.9	-0.2	+0.3	+0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.3	+1.1	+0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+1.2	+0.2	-0.0	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.5	+1.1	+0.1	-0.0
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.3	+0.7	+0.9	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.9	+1.1	+0.3	+0.1