Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15480	BPHYT_RS15485	BPHYT_RS15490	BPHYT_RS15495	BPHYT_RS15500
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-0.3	-1.4	N.D.	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.1	-0.4	-1.3	N.D.	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.1	-1.3	N.D.	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.0	-1.2	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.4	-0.7	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.3	-1.2	N.D.	-0.1
carbon source	propionate (C)	-0.1	-0.3	-0.9	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.7	+0.3	N.D.	-0.4
carbon source	D-Glucose (C)	+0.2	+0.1	-1.7	N.D.	+0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.0	+0.5	-1.1	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	+0.1	+0.5	-1.2	N.D.	+0.0
supernatant control	Vogels_fungal_media; pH 5.5	+0.2	+0.3	-1.0	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.7	+0.1	-0.7	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.5	-1.0	N.D.	-0.1
phage	36hr PHYTO8 MOI 10	+0.4	+0.3	-0.8	N.D.	+0.2
phage	24hr PHYTO3 MOI 10	+0.7	+0.3	-0.7	N.D.	-0.0
phage	24hr PHYTO7 MOI 10	-0.4	-0.3	+1.0	N.D.	-0.0
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.4	-0.8	+0.9	N.D.	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.8	-0.4	N.D.	-0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	-0.6	+1.7	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.0	+1.0	N.D.	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	-0.3	+1.5	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.1	-0.3	+0.3	N.D.	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.5	+1.7	N.D.	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.2	+1.3	N.D.	+0.2
phage	24hr PHYTO1 MOI 10	+0.2	+0.7	+0.7	N.D.	-0.0
phage	36hr PHYTO4 MOI 1	+0.6	+0.7	+0.2	N.D.	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.2	+0.0	+0.9	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+0.2	+1.9	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	+2.5	+0.1	N.D.	-0.1