Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15445	BPHYT_RS15450	BPHYT_RS15455	BPHYT_RS15460	BPHYT_RS15465
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.4	-0.6	-0.3	-1.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.7	-0.5	-0.5	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.7	-1.1	-0.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	-0.7	-0.5	-0.3	-0.9
carbon source	L-Glutamine (C)	+0.1	-1.2	-1.1	-0.1	+0.1
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	-0.0	-0.5	-0.6	+0.0	-1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.6	-0.5	-0.4	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.6	-0.5	-0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.3	+0.3	-0.3	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.7	-0.4	+0.5	-0.4
phage	P. phyto PHYTO2 MOI 0.1	-0.1	-0.2	+0.7	-0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-0.6	-0.3	-0.4	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.8	-0.1	-0.2	+0.8
supernatant control	Vogels_fungal_media 0.1X	+0.3	-0.4	-0.7	-0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.9	+0.1	+0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.6	+0.2	+0.6	-0.5
phage	24hr PHYTO7 MOI 1	+0.1	+0.1	+0.6	+0.3	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.9	+0.8	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.7	+0.8	+0.1	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.6	+0.7	+0.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-0.5	+0.7	+0.5	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.5	+0.8	+0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.6	+0.4	+0.8	+0.4
phage	24hr PHYTO6 MOI 1	+0.1	-0.4	+0.7	+0.4	+0.4
phage	24hr PHYTO6 MOI 0.1	+0.1	-0.4	+0.7	+0.3	+0.6
phage	24hr PHYTO3 MOI 10	-0.0	-0.4	+1.0	+0.3	+0.6
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.2	-0.4	+0.6	+0.1	+1.0
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.3	+1.5	+1.9	+0.6	+0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.7	+2.4	+2.8	+0.6	-1.0
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.6	+2.3	+2.9	+0.4	-0.7