Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15405	BPHYT_RS15410	BPHYT_RS15415	BPHYT_RS15420	BPHYT_RS15425
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	-0.6	-3.3	-0.1	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	+0.6	-3.8	-0.5	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.0	-0.3	-3.2	-0.2	-0.2
pH	LB, pH5	-0.0	-0.4	-3.3	-0.0	+0.0
stress	Bacitracin 0.25 mg/ml	+0.2	+0.2	-3.7	-0.1	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.1	+0.0	-2.9	-0.2	-0.1
carbon source	L-Proline (C)	+0.1	+0.1	-3.4	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.0	-2.9	-0.1	-0.0
pH	LB, pH5	-0.0	-0.4	-3.0	+0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.1	-0.3	-2.5	+0.1	-0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.4	-1.9	-0.8	+0.1
nitrogen source	L-Proline (N)	+0.0	+0.2	-3.4	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.6	-3.2	-0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.4	-1.8	-0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-0.3	-2.7	+0.5	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.2	-0.9	-2.1	+0.3	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.2	-3.0	+0.5	+0.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.1	+0.5	-2.0	-0.4	-0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.3	-2.0	-0.4	+0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.0	-0.4	-2.2	+0.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	+0.7	-2.6	-0.0	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.3	-2.4	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	-0.1	-2.3	+0.7	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.2	-2.3	+0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.1	-2.4	+0.4	-0.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.0	+0.7	-2.3	+0.2	+0.1
carbon source	Tween 20 (C)	+0.2	+0.9	-2.0	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+1.5	-2.6	+0.3	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.5	-2.1	+0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.9	-1.3	+0.8	+0.2