Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS15390 and BPHYT_RS15395 are separated by 49 nucleotidesBPHYT_RS15395 and BPHYT_RS15400 overlap by 4 nucleotidesBPHYT_RS15400 and BPHYT_RS15405 are separated by 149 nucleotidesBPHYT_RS15405 and BPHYT_RS15410 are separated by 106 nucleotides BPHYT_RS15390: BPHYT_RS15390 - 3,4-Dihydroxy-2-butanone 4-phosphate synthase, at 3,493,736 to 3,494,872 _RS15390 BPHYT_RS15395: BPHYT_RS15395 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,494,922 to 3,495,428 _RS15395 BPHYT_RS15400: BPHYT_RS15400 - N utilization substance protein B homolog, at 3,495,425 to 3,495,859 _RS15400 BPHYT_RS15405: BPHYT_RS15405 - aminotransferase, at 3,496,009 to 3,497,205 _RS15405 BPHYT_RS15410: BPHYT_RS15410 - hypothetical protein, at 3,497,312 to 3,498,493 _RS15410
Group Condition BPHYT_RS15390 BPHYT_RS15395 BPHYT_RS15400 BPHYT_RS15405 BPHYT_RS15410
phage 24hr PHYTO9 MOI 0.1 -0.8 N.D. N.D. -0.4 -0.7
phage 24hr PHYTO11 MOI 0.1 -0.5 N.D. N.D. -0.1 -0.9
phage 24hr PHYTO3 MOI 10 -0.6 N.D. N.D. +0.0 -0.7
carbon source L-Fucose (C) -0.3 N.D. N.D. -0.2 -0.7
carbon source Suberic (C) -0.3 N.D. N.D. +0.0 -0.9
phage 24hr PHYTO10 MOI 10 +0.1 N.D. N.D. -0.2 -1.0
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.5 N.D. N.D. +0.2 -0.8
carbon source Malonic (C) -0.2 N.D. N.D. +0.2 -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.2 N.D. N.D. -0.3 -0.6
phage P. phyto PHYTO2 MOI 1 -0.5 N.D. N.D. -0.4 -0.2
carbon source Sebacic (C) -0.0 N.D. N.D. -0.0 -1.0
carbon source D-Xylose (C) -0.4 N.D. N.D. +0.1 -0.6
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.7 N.D. N.D. +0.0 -0.4
phage 36hr PHYTO10 MOI 1 +0.2 N.D. N.D. -0.1 -1.1
nophagecontrol 36hr Phyto Lib Only -0.2 N.D. N.D. +0.1 -0.9
carbon source D-Galacturonic Acid (C) +0.1 N.D. N.D. +0.0 -1.0
phage 36hr PHYTO2 MOI 1 +0.3 N.D. N.D. -0.0 -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.1 N.D. N.D. +0.2 -0.9
phage 24hr PHYTO2 MOI 1 +0.1 N.D. N.D. +0.1 -1.0
phage 36hr PHYTO4 MOI 1 +0.2 N.D. N.D. +0.3 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 N.D. N.D. -0.2 +0.5
motility outer cut, LB soft agar motility assay -0.6 N.D. N.D. +0.1 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 N.D. N.D. +0.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 N.D. N.D. -0.1 +0.6
phage 24hr PHYTO3 MOI 10 -0.5 N.D. N.D. +0.5 +0.2
motility inner cut, LB soft agar motility assay -0.3 N.D. N.D. +0.3 +0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 N.D. N.D. +0.2 +0.9
carbon source Tween 20 (C) -0.2 N.D. N.D. +0.2 +0.9
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. N.D. +0.9 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 N.D. N.D. -0.1 +1.5
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