Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS15085 and BPHYT_RS15090 are separated by 96 nucleotidesBPHYT_RS15090 and BPHYT_RS15095 are separated by 82 nucleotidesBPHYT_RS15095 and BPHYT_RS15100 are separated by 105 nucleotidesBPHYT_RS15100 and BPHYT_RS15105 are separated by 83 nucleotides BPHYT_RS15085: BPHYT_RS15085 - aldehyde oxidase, at 3,432,382 to 3,434,784 _RS15085 BPHYT_RS15090: BPHYT_RS15090 - xanthine dehydrogenase accessory protein XdhC, at 3,434,881 to 3,435,897 _RS15090 BPHYT_RS15095: BPHYT_RS15095 - adenine deaminase, at 3,435,980 to 3,437,032 _RS15095 BPHYT_RS15100: BPHYT_RS15100 - guanine deaminase, at 3,437,138 to 3,438,511 _RS15100 BPHYT_RS15105: BPHYT_RS15105 - FAD-dependent oxidoreductase, at 3,438,595 to 3,439,839 _RS15105
Group Condition BPHYT_RS15085 BPHYT_RS15090 BPHYT_RS15095 BPHYT_RS15100 BPHYT_RS15105
phage 24hr PHYTO11 MOI 1 -0.1 -1.6 -0.0 -0.0 -0.6
phage 24hr PHYTO9 MOI 10 -0.3 -1.8 -0.3 +0.3 +0.4
phage 36hr PHYTO7 MOI 0.1 -0.4 -1.2 -0.3 -0.1 +0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.5 -0.6 +1.4 -1.3 -0.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.6 -0.4 +1.0 -1.1 -0.3
phage 24hr PHYTO10 MOI 10 -0.0 -1.4 -0.4 +0.2 +0.5
phage 36hr PHYTO2 MOI 1 -0.5 -0.8 -0.6 +0.1 +0.7
phage 36hr PHYTO6 MOI 0.1 -0.3 -1.1 -0.5 +0.0 +0.9
phage 36hr PHYTO3 MOI 1 -0.6 -0.7 -0.3 +0.1 +0.7
phage 24hr PHYTO3 MOI 1 -0.3 -0.9 -0.2 +0.1 +0.5
phage 36hr PHYTO3 MOI 1 -0.6 -0.5 -0.6 -0.1 +0.9
phage 36hr PHYTO2 MOI 1 -0.4 -1.2 -0.3 +0.3 +0.8
phage 36hr PHYTO1 MOI 1 -0.1 -0.9 -0.2 +0.0 +0.6
phage 24hr PHYTO2 MOI 0.1 -0.2 -0.6 -0.4 +0.1 +0.6
phage 24hr PHYTO10 MOI 10 -0.3 -0.7 -0.1 +0.0 +0.7
phage 36hr PHYTO4 MOI 1 -0.0 -1.1 -0.0 +0.3 +0.5
phage 36hr PHYTO6 MOI 10 -0.2 -0.9 -0.1 -0.1 +1.1
phage 24hr PHYTO4 MOI 10 -0.4 -0.9 -0.2 +0.1 +1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.3 -0.7 -0.3 +0.5
phage 36hr PHYTO6 MOI 1 -0.2 -0.8 -0.1 +0.1 +0.9
phage 36hr PHYTO10 MOI 10 -0.2 -0.7 +0.0 +0.2 +0.9
phage 24hr PHYTO2 MOI 1 -0.2 -0.5 -0.4 +0.2 +1.2
phage 24hr PHYTO3 MOI 10 -0.2 -0.5 -0.1 +0.2 +1.2
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.5 +0.8 +0.2 -0.0 -0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.3 -0.3 +0.5 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +0.7 -0.2 +0.1 +0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.7 +0.3 -0.2 +0.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.8 +0.3 -0.1 +0.9
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +1.8 +0.4 +1.1 +0.2 -0.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 +1.4 +0.4 +0.1 +1.4
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