Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15030	BPHYT_RS15035	BPHYT_RS15040	BPHYT_RS15045	BPHYT_RS15050
phage	24hr PHYTO4 MOI 0.1	-0.2	-0.9	-0.0	-1.2	-0.1
phage	36hr PHYTO2 MOI 1	-0.5	-0.3	-0.1	-0.7	-0.5
nophagecontrol	24hr Phyto Lib only	-0.4	-1.0	-0.1	-0.5	-0.0
phage	36hr PHYTO3 MOI 1	-0.1	-0.1	+0.0	-0.8	-0.8
phage	24hr PHYTO6 MOI 1	-0.5	-0.4	+0.3	-0.7	-0.4
phage	24hr PHYTO10 MOI 10	-0.3	-0.9	+0.0	-0.6	+0.0
phage	36hr PHYTO7 MOI 0.1	-0.5	-0.3	+0.1	-1.0	-0.0
phage	24hr PHYTO9 MOI 10	-0.9	+0.3	+0.1	-0.6	-0.5
phage	P. phyto PHYTO2 MOI 1	-0.2	-0.1	+0.5	-1.3	-0.3
phage	36hr PHYTO7 MOI 1	-0.6	-0.6	+0.3	-0.0	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.5	+0.0	-1.1	+0.1
phage	24hr PHYTO1 MOI 10	-0.6	+0.2	+0.2	-0.6	-0.4
phage	24hr PHYTO3 MOI 10	+0.0	-0.3	+0.5	-1.2	-0.3
phage	24hr PHYTO MOI 0.1	-0.3	+0.5	-0.1	-0.9	-0.2
phage	24hr PHYTO11 MOI 0.1	-0.7	+0.5	+0.1	-0.9	-0.0
phage	P. phyto PHYTO2 MOI 1	-0.1	-0.5	+0.3	-0.9	+0.2
phage	36hr PHYTO9 MOI 1	-0.2	+0.3	+0.2	-0.7	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-0.3	+0.6	-1.0	-0.1
carbon source	Malonic (C)	+0.1	-0.8	+0.4	+0.5	-0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.9	+0.1	+0.5	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+1.0	+0.1	-0.9	+0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.4	-0.4	+0.7	+0.7	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.8	-0.1	+0.5	-0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	+0.4	+0.1	-0.6	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	+0.4	+0.8	+0.3	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+1.1	+0.5	-0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+1.5	+0.3	-0.3	-0.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.4	+0.6	+0.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.5	+0.3	+0.7	-0.2	+0.3
carbon source	Trisodium citrate (C)	+0.4	+0.9	+0.5	-0.3	+0.3