Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS15010	BPHYT_RS15015	BPHYT_RS15020	BPHYT_RS15025	BPHYT_RS15030
phage	24hr PHYTO2 MOI 1	-0.0	-1.6	-1.0	-0.2	-0.4
carbon source	D-Glucose (C)	-0.6	-3.0	-0.1	+0.2	+0.4
phage	36hr PHYTO3 MOI 1	-0.3	-1.5	-1.0	+0.1	-0.2
phage	P. phyto PHYTO2 MOI 1	-0.2	-2.3	-0.6	+0.1	-0.1
phage	24hr PHYTO6 MOI 0.1	+0.0	-1.5	-0.7	-0.2	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-2.6	-0.2	-0.3	+0.2
vitamin	No vitamins t2	-0.4	-2.1	-0.2	-0.0	-0.0
phage	24hr PHYTO3 MOI 10	+0.3	-0.9	-0.8	-0.6	-0.5
motility	outer cut, LB soft agar motility assay	-0.2	-0.7	-1.5	+0.2	-0.4
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-0.3	-2.0	-0.4	+0.0	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.2	-1.9	-0.3	-0.2	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-1.7	-0.6	-0.1	-0.2
phage	36hr PHYTO6 MOI 0.1	+0.2	-1.4	-0.7	+0.2	-0.6
stress	Cobalt chloride 0.25 mM	-4.4	+1.7	+0.3	-0.1	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.2	-1.9	-0.2	-0.2	+0.2
carbon source	Sebacic (C)	+0.2	-2.5	+0.1	+0.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.9	-1.6	-0.1	-0.1	+0.8
phage	24hr PHYTO2 MOI 0.1	+0.6	-1.5	-0.6	-0.1	-0.3
nophagecontrol	36hr Phyto Lib only	+0.4	-1.4	-0.7	-0.1	-0.0
carbon source	adipate (C)	+0.0	-2.0	-0.2	+0.1	+0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.4	-1.6	-0.8	+0.1	+0.3
carbon source	Suberic (C)	+0.6	-1.7	-0.2	+0.3	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.8	-1.1	-0.5	-0.2	+0.1
nophagecontrol	36hr Phyto Lib Only	+0.0	+1.4	-0.4	-0.0	-0.8
supernatant control	Vogels_fungal_media; pH 5.5	+0.8	+0.8	-0.3	-0.9	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+1.6	+0.1	+0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	+1.1	+0.3	-0.2	-0.2
carbon source	D-Glucosamine Hydrochloride (C)	-0.1	+2.3	-0.3	+0.1	-0.2
stress	Nickel (II) chloride 1 mM	-0.4	+2.8	-0.5	+0.0	-0.0
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.9	+1.7	-0.2	+0.0	-0.0