Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS14935	BPHYT_RS14940	BPHYT_RS14945	BPHYT_RS14950	BPHYT_RS14955
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	N.D.	-2.5	-0.2	-0.4
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	N.D.	-1.3	-0.2	-0.5
phage	36hr PHYTO11 MOI 0.1	N.D.	N.D.	-2.2	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	N.D.	-1.0	-0.6	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	-1.3	-0.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-2.2	+0.8	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	-1.1	+0.3	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	N.D.	-2.1	+0.5	+0.4
stress	Bacitracin 0.25 mg/ml	N.D.	N.D.	-1.6	+0.2	+0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	N.D.	-1.2	+0.3	-0.3
nophagecontrol	36hr Phyto Lib Only	N.D.	N.D.	-1.5	+0.2	+0.2
carbon source	Protocatechuic Acid (C)	N.D.	N.D.	-1.1	-0.4	+0.6
phage	36hr PHYTO4 MOI 1	N.D.	N.D.	-1.4	+0.5	+0.0
carbon source	Gly-Glu (C)	N.D.	N.D.	-1.3	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-1.6	+0.4	+0.5
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	N.D.	-1.0	+0.6	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.8	+0.6	-0.2
phage	P. phyto corn MOI 0.1	N.D.	N.D.	-1.2	+0.2	+0.6
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-1.0	+0.5	+0.2
carbon source	Xylitol (C)	N.D.	N.D.	-1.0	+0.4	+0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.7	-0.2	+0.9
phage	P. phyto PHYTO2 MOI 1	N.D.	N.D.	-1.1	+0.2	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.9	+0.3	+0.7
phage	36hr PHYTO11 MOI 0.1	N.D.	N.D.	-0.7	+0.8	+0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	N.D.	-0.9	+0.8	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	N.D.	N.D.	-0.7	+0.8	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.6	+1.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.5	+1.1	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.6	+0.6	+0.5
phage	24hr PHYTO4 MOI 0.1	N.D.	N.D.	+0.7	+0.7	+0.4