Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS14860 and BPHYT_RS14865 are separated by 49 nucleotidesBPHYT_RS14865 and BPHYT_RS14870 are separated by 150 nucleotidesBPHYT_RS14870 and BPHYT_RS14875 are separated by 67 nucleotidesBPHYT_RS14875 and BPHYT_RS14880 are separated by 471 nucleotides BPHYT_RS14860: BPHYT_RS14860 - sugar kinase, at 3,379,889 to 3,380,809 _RS14860 BPHYT_RS14865: BPHYT_RS14865 - UDP-glucose 6-dehydrogenase, at 3,380,859 to 3,382,262 _RS14865 BPHYT_RS14870: BPHYT_RS14870 - hypothetical protein, at 3,382,413 to 3,383,588 _RS14870 BPHYT_RS14875: BPHYT_RS14875 - membrane protein, at 3,383,656 to 3,383,949 _RS14875 BPHYT_RS14880: BPHYT_RS14880 - integration host factor subunit beta, at 3,384,421 to 3,384,744 _RS14880
Group Condition BPHYT_RS14860 BPHYT_RS14865 BPHYT_RS14870 BPHYT_RS14875 BPHYT_RS14880
motility outer cut, LB soft agar motility assay N.D. -7.7 N.D. N.D. -0.7
stress Cobalt chloride 0.25 mM N.D. -7.8 N.D. N.D. -0.5
carbon source D-Mannose (C) N.D. -8.0 N.D. N.D. -0.1
carbon source D-Xylose (C) N.D. -7.9 N.D. N.D. -0.1
stress Lomefloxacin 0.001 mM N.D. -7.9 N.D. N.D. +0.3
stress Cephalothin 2 mg/ml N.D. -7.9 N.D. N.D. +0.3
motility inner cut, LB soft agar motility assay N.D. -6.6 N.D. N.D. -0.8
stress Bacitracin 0.25 mg/ml N.D. -7.6 N.D. N.D. +0.3
carbon source Tween 20 (C) N.D. -7.4 N.D. N.D. +0.2
motility outer cut, LB soft agar motility assay N.D. -6.0 N.D. N.D. -1.1
nitrogen source D-Alanine (N) N.D. -6.7 N.D. N.D. -0.1
stress Bacitracin 0.125 mg/ml N.D. -6.0 N.D. N.D. -0.5
motility inner cut, LB soft agar motility assay N.D. -5.1 N.D. N.D. -1.0
motility outer cut, LB soft agar motility assay N.D. -4.9 N.D. N.D. -1.2
stress Polymyxin B sulfate 0.0625 mg/ml N.D. -6.1 N.D. N.D. +0.1
stress Benzethonium chloride 0.0016 mM N.D. -6.0 N.D. N.D. +0.1
stress Nickel (II) chloride 0.5 mM N.D. -5.8 N.D. N.D. +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -5.4 N.D. N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. -5.1 N.D. N.D. -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -5.1 N.D. N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -5.2 N.D. N.D. -0.3
pH LB, pH4 N.D. -5.0 N.D. N.D. -0.0
motility inner cut, LB soft agar motility assay N.D. -4.5 N.D. N.D. -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -5.5 N.D. N.D. +0.6
nitrogen source L-Asparagine (N) N.D. -3.8 N.D. N.D. -0.9
carbon source Trisodium citrate (C) N.D. -4.4 N.D. N.D. -0.3
carbon source L-Proline (C) N.D. -4.4 N.D. N.D. -0.2
carbon source L-Histidine (C) N.D. -4.1 N.D. N.D. -0.5
carbon source L-Arginine (C) N.D. -4.5 N.D. N.D. +0.1
carbon source Disodium Glutarate (C) N.D. -3.9 N.D. N.D. +0.8
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