Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS14840 and BPHYT_RS14845 are separated by 105 nucleotidesBPHYT_RS14845 and BPHYT_RS14850 are separated by 274 nucleotidesBPHYT_RS14850 and BPHYT_RS14855 are separated by 77 nucleotidesBPHYT_RS14855 and BPHYT_RS14860 are separated by 148 nucleotides BPHYT_RS14840: BPHYT_RS14840 - lytic transglycosylase, at 3,375,874 to 3,377,022 _RS14840 BPHYT_RS14845: BPHYT_RS14845 - cysteine synthase, at 3,377,128 to 3,378,030 _RS14845 BPHYT_RS14850: BPHYT_RS14850 - competence protein ComE, at 3,378,305 to 3,378,670 _RS14850 BPHYT_RS14855: BPHYT_RS14855 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 3,378,748 to 3,379,740 _RS14855 BPHYT_RS14860: BPHYT_RS14860 - sugar kinase, at 3,379,889 to 3,380,809 _RS14860
Group Condition BPHYT_RS14840 BPHYT_RS14845 BPHYT_RS14850 BPHYT_RS14855 BPHYT_RS14860
nitrogen source L-Glutamine (N) +0.1 -7.2 N.D. -5.5 N.D.
nutrient Min media with glucose -0.1 -5.9 N.D. -6.2 N.D.
carbon source D-Sorbitol (C) +0.1 -6.2 N.D. -6.0 N.D.
carbon source Putrescine (C) -0.2 -6.0 N.D. -5.9 N.D.
nitrogen source L-Alanine (N) +0.1 -6.8 N.D. -5.2 N.D.
carbon source L-Glutamine (C) -0.1 -5.9 N.D. -5.8 N.D.
carbon source L-Tryptophan (C) -0.1 -6.0 N.D. -5.8 N.D.
carbon source D-Fructose (C) -0.2 -5.9 N.D. -5.7 N.D.
carbon source NAG (C) +0.1 -6.0 N.D. -5.8 N.D.
carbon source L-Phenylalanine (C) -0.1 -5.9 N.D. -5.7 N.D.
carbon source D,L-Lactate (C) -0.0 -5.9 N.D. -5.7 N.D.
nitrogen source L-Glutamic (N) +0.3 -6.8 N.D. -5.2 N.D.
carbon source L-Alanine (C) -0.1 -5.8 N.D. -5.6 N.D.
nitrogen source D-Alanine (N) +0.4 -6.7 N.D. -5.1 N.D.
carbon source Xylitol (C) -0.1 -5.7 N.D. -5.6 N.D.
carbon source D-Gluconic Acid (C) -0.0 -5.3 N.D. -6.0 N.D.
carbon source Tween 20 (C) +0.0 -5.6 N.D. -5.5 N.D.
carbon source L-Fucose (C) -0.0 -5.5 N.D. -5.4 N.D.
carbon source L-Histidine (C) -0.1 -6.1 N.D. -4.7 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -1.8 -5.4 N.D. -3.7 N.D.
nutrient L-Histidine +0.1 -6.6 N.D. -4.3 N.D.
carbon source D-Galactose (C) -0.1 -6.0 N.D. -4.6 N.D.
carbon source D-Mannose (C) -0.3 -6.2 N.D. -4.2 N.D.
carbon source L-Asparagine (C) +0.0 -6.0 N.D. -4.6 N.D.
carbon source D-Xylose (C) -0.2 -5.7 N.D. -4.6 N.D.
carbon source m-Inositol (C) -0.2 -4.8 N.D. -5.5 N.D.
carbon source L-Rhamnose (C) +0.1 -4.5 N.D. -6.0 N.D.
carbon source pyruvate (C) +0.0 -5.3 N.D. -4.8 N.D.
carbon source D-Lactate (C) +0.2 -4.2 N.D. -5.9 N.D.
vitamin With vitamins t1 +0.3 -5.1 N.D. -4.8 N.D.
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