Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS14810 and BPHYT_RS14815 are separated by 33 nucleotidesBPHYT_RS14815 and BPHYT_RS14820 overlap by 11 nucleotidesBPHYT_RS14820 and BPHYT_RS14825 are separated by 240 nucleotidesBPHYT_RS14825 and BPHYT_RS14830 are separated by 18 nucleotides BPHYT_RS14810: BPHYT_RS14810 - dioxygenase, at 3,370,094 to 3,370,891 _RS14810 BPHYT_RS14815: BPHYT_RS14815 - methionine ABC transporter permease, at 3,370,925 to 3,371,578 _RS14815 BPHYT_RS14820: BPHYT_RS14820 - methionine ABC transporter ATP-binding protein, at 3,371,568 to 3,372,602 _RS14820 BPHYT_RS14825: BPHYT_RS14825 - hydrolase, at 3,372,843 to 3,373,754 _RS14825 BPHYT_RS14830: BPHYT_RS14830 - enoyl-CoA hydratase, at 3,373,773 to 3,374,582 _RS14830
Group Condition BPHYT_RS14810 BPHYT_RS14815 BPHYT_RS14820 BPHYT_RS14825 BPHYT_RS14830
carbon source L-Tryptophan (C) -0.7 -0.8 -1.5 -0.2 +0.1
phage 36hr PHYTO10 MOI 10 +0.0 -0.9 -0.9 -0.2 -0.3
carbon source adipate (C) -0.3 -0.4 -0.8 +0.0 -0.3
nitrogen source L-Lysine (N) -0.5 -0.8 -0.7 -0.0 +0.2
phage 36hr PHYTO4 MOI 1 +0.1 -0.4 -0.5 -0.3 -0.7
phage 24hr PHYTO6 MOI 0.1 +0.2 -0.2 -0.9 -0.0 -0.6
nophagecontrol 36hr Phyto Lib Only +0.3 +0.1 -0.6 -0.3 -0.6
phage 24hr PHYTO7 MOI 1 +0.3 +0.1 -0.9 +0.0 -0.4
phage 36hr PHYTO11 MOI 1 +0.5 +0.2 -0.9 -0.4 -0.3
phage P. phyto corn MOI 1 +0.3 -0.6 -0.5 +0.1 +0.1
phage 36hr PHYTO4 MOI 1 +0.3 -0.5 -0.3 +0.2 -0.4
phage PHYTO3 MOI 0.1 +0.2 +0.1 -0.9 +0.3 -0.4
supernatant control Vogels_fungal_media 0.1X -0.2 -0.4 -0.6 +0.5 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.5 -0.3 -0.6 +0.2 -0.2
phage 36hr PHYTO6 MOI 10 +0.4 -0.9 +0.1 +0.1 -0.1
nophagecontrol 36hr Phyto Lib Only +0.1 +0.0 -0.8 +0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.5 +0.3 -0.3 +0.0
nitrogen source Ammonium chloride (N) -0.1 +0.6 -0.8 +0.1 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 -0.2 -0.7 +0.6 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.6 +0.2 +0.2 +0.4
nitrogen source L-Proline (N) -0.1 +0.6 -0.4 -0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +0.4 -0.7 +0.3 -0.0
vitamin No vitamins t2 +0.2 +0.5 -0.6 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 -0.3 -0.3 +0.4 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +0.9 -0.4 +0.0 -0.2
phage 24hr PHYTO6 MOI 10 +0.3 -0.6 +1.1 +0.1 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.1 +0.2 +1.3 -0.1 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.3 +0.6 -0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +0.4 +0.0 +0.3 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.4 +0.2 +0.4 +0.1
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