Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS14625 and BPHYT_RS14630 overlap by 1 nucleotidesBPHYT_RS14630 and BPHYT_RS14635 are separated by 488 nucleotidesBPHYT_RS14635 and BPHYT_RS14640 are separated by 181 nucleotidesBPHYT_RS14640 and BPHYT_RS14645 are separated by 181 nucleotides BPHYT_RS14625: BPHYT_RS14625 - transcriptional regulator, at 3,331,371 to 3,332,684 _RS14625 BPHYT_RS14630: BPHYT_RS14630 - MFS transporter, at 3,332,684 to 3,333,940 _RS14630 BPHYT_RS14635: BPHYT_RS14635 - ArsR family transcriptional regulator, at 3,334,429 to 3,335,148 _RS14635 BPHYT_RS14640: BPHYT_RS14640 - FecR protein, at 3,335,330 to 3,337,018 _RS14640 BPHYT_RS14645: BPHYT_RS14645 - hypothetical protein, at 3,337,200 to 3,337,700 _RS14645
Group Condition BPHYT_RS14625 BPHYT_RS14630 BPHYT_RS14635 BPHYT_RS14640 BPHYT_RS14645
phage 24hr PHYTO3 MOI 10 -0.7 +0.0 -0.0 -0.5 N.D.
phage P. phyto PHYTO2 MOI 0.1 -0.4 +0.1 -0.7 -0.1 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.4 -0.8 -0.1 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.6 +0.4 +0.2 N.D.
phage 24hr PHYTO4 MOI 10 -0.5 -0.1 +0.5 -0.1 N.D.
phage 36hr PHYTO1 MOI 10 -0.7 +0.3 +0.4 -0.2 N.D.
carbon source Suberic (C) +0.2 +0.4 -0.6 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +0.6 -0.6 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.8 -0.2 -0.2 -0.2 N.D.
phage 24hr PHYTO11 MOI 1 -0.3 +0.4 +0.5 -0.2 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.3 +0.5 +0.0 +0.3 N.D.
temperature LB 37C -0.2 +1.1 -0.0 -0.1 N.D.
motility outer cut, LB soft agar motility assay +0.4 +0.8 -0.5 +0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.5 -0.2 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 +0.4 +0.6 +0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.3 +0.7 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.9 +0.3 +0.0 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.7 +0.3 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.9 +0.2 +0.1 +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.5 +0.4 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 +0.7 +0.4 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.3 +0.4 +0.4 N.D.
nitrogen source L-Glutamic (N) +0.4 +0.6 +0.2 +0.1 N.D.
carbon source Phenylacetic 5 mM (C) +0.2 +0.7 +0.5 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.7 +0.3 +0.2 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.6 +0.4 +0.2 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.5 +0.3 +0.5 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.5 +0.3 +0.5 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.6 +0.4 +0.4 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.9 +0.5 +0.5 N.D.
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