Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS14395 and BPHYT_RS14400 are separated by 4 nucleotidesBPHYT_RS14400 and BPHYT_RS14405 are separated by 83 nucleotidesBPHYT_RS14405 and BPHYT_RS14410 are separated by 101 nucleotidesBPHYT_RS14410 and BPHYT_RS14415 are separated by 117 nucleotides BPHYT_RS14395: BPHYT_RS14395 - sugar dehydratase, at 3,285,787 to 3,286,830 _RS14395 BPHYT_RS14400: BPHYT_RS14400 - anti-sigma factor, at 3,286,835 to 3,287,464 _RS14400 BPHYT_RS14405: BPHYT_RS14405 - RNA polymerase sigma factor RpoE, at 3,287,548 to 3,288,147 _RS14405 BPHYT_RS14410: BPHYT_RS14410 - hypothetical protein, at 3,288,249 to 3,288,632 _RS14410 BPHYT_RS14415: BPHYT_RS14415 - 3-oxoacyl-ACP synthase, at 3,288,750 to 3,289,988 _RS14415
Group Condition BPHYT_RS14395 BPHYT_RS14400 BPHYT_RS14405 BPHYT_RS14410 BPHYT_RS14415
motility outer cut, LB soft agar motility assay -3.5 -4.5 N.D. -0.6 N.D.
motility inner cut, LB soft agar motility assay -3.5 -4.6 N.D. -0.0 N.D.
motility outer cut, LB soft agar motility assay -3.5 -3.7 N.D. -0.9 N.D.
motility outer cut, LB soft agar motility assay -4.0 -3.2 N.D. +0.1 N.D.
motility inner cut, LB soft agar motility assay -3.6 -3.4 N.D. +0.2 N.D.
motility inner cut, LB soft agar motility assay -2.8 -3.9 N.D. -0.2 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.8 -4.8 N.D. -1.0 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -3.0 -3.4 N.D. -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -1.4 -4.3 N.D. +0.1 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -1.3 -4.8 N.D. +1.4 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -1.4 -3.1 N.D. -0.2 N.D.
carbon source Suberic (C) -1.6 -2.7 N.D. -0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.6 -2.8 N.D. +0.2 N.D.
nitrogen source Uridine (N) -1.2 -3.5 N.D. +0.9 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.1 -2.4 N.D. +0.8 N.D.
phage 24hr PHYTO7 MOI 10 +1.6 +2.5 N.D. -0.8 N.D.
phage 24hr PHYTO3 MOI 10 +1.7 +2.5 N.D. -0.3 N.D.
phage 36hr PHYTO11 MOI 1 +1.7 +2.6 N.D. +0.3 N.D.
phage 36hr PHYTO2 MOI 1 +2.3 +2.3 N.D. +0.1 N.D.
phage 36hr PHYTO10 MOI 10 +1.9 +2.3 N.D. +0.5 N.D.
phage 24hr PHYTO7 MOI 1 +2.0 +2.2 N.D. +0.6 N.D.
phage 36hr PHYTO8 MOI 0.1 +1.8 +2.0 N.D. +0.9 N.D.
phage 36hr PHYTO11 MOI 1 +2.1 +2.5 N.D. +0.2 N.D.
phage 36hr PHYTO3 MOI 1 +1.8 +2.5 N.D. +0.7 N.D.
phage 36hr PHYTO6 MOI 10 +1.9 +2.5 N.D. +0.6 N.D.
phage 36hr PHYTO8 MOI 10 +1.9 +2.4 N.D. +0.6 N.D.
phage 36hr PHYTO10 MOI 10 +2.1 +2.3 N.D. +0.6 N.D.
phage 36hr PHYTO2 MOI 1 +2.1 +2.6 N.D. +0.4 N.D.
phage 36hr PHYTO3 MOI 1 +2.1 +2.6 N.D. +0.4 N.D.
phage 36hr PHYTO4 MOI 1 +2.2 +2.7 N.D. +0.4 N.D.
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