Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS14095	BPHYT_RS14100	BPHYT_RS14105	BPHYT_RS14110	BPHYT_RS14115
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.0	-0.4	-1.5	-0.2	-4.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-2.5	-0.1	+0.1	+0.1	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.0	+0.4	-1.5	+0.2	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.5	+0.0	-2.0	-0.1	-0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-1.6	-0.1	-1.3	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	+0.1	+0.0	-1.5	-0.2	-0.6
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.3	-0.1	-1.7	+0.1	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.1	-0.0	-1.5	-0.2	-0.3
carbon source	Phenylacetic 5 mM (C)	-1.9	-0.0	-0.1	+0.1	-0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-1.0	-0.0	-1.2	+0.1	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.1	+0.1	-1.8	-0.0	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.0	+0.1	-1.8	-0.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1	+0.2	-1.2	+0.3	-0.0
phage	P. phyto PHYTO2 MOI 1	-1.3	-0.2	+0.3	-0.0	-0.6
stress	Nickel (II) chloride 1 mM	-0.1	-0.0	-1.7	+0.4	-0.4
nitrogen source	Carnitine Hydrochloride (N)	-0.7	-0.0	-1.4	+0.3	+0.0
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.4	+0.0	-0.8	-0.3	-1.0
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-2.0	-0.0	+0.2	-0.1	+0.4
carbon source	D-Glucosamine Hydrochloride (C)	+0.6	-0.2	-1.3	+0.0	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.0	-0.9	-0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	+0.1	-1.3	+0.4	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.8	+0.4	-0.8	+0.5	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.7	+0.2	-1.5	+0.2	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.3	-1.0	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.8	-0.0	-1.5	+0.1	+0.4
stress	Benzethonium chloride 0.0016 mM	-1.1	+0.1	+0.4	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.9	+0.2	-1.1	-0.1	+0.2
phage	36hr PHYTO3 MOI 1	+0.2	-0.1	+0.9	-0.4	-0.6
phage	36hr PHYTO2 MOI 1	+0.7	-0.0	+0.9	-0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+2.7	+0.1	+0.3	+0.0	+0.2