Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS13665	BPHYT_RS13670	BPHYT_RS13675	BPHYT_RS13680	BPHYT_RS13685
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.3	N.D.	-2.1	-0.5	+0.0
nophagecontrol	36hr Phyto Lib only	-0.6	N.D.	+0.2	-0.3	-0.9
supernatant control	Vogels_fungal_media; pH 5.5	+0.0	N.D.	-0.8	-0.1	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.1	N.D.	-0.1	-0.3	-0.8
nophagecontrol	36hr Phyto Lib only	-0.0	N.D.	-0.5	-0.4	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	N.D.	-0.6	-0.2	+0.2
carbon source	Dodecandioic (C)	+0.2	N.D.	-0.6	-0.2	-0.3
phage	24hr PHYTO10 MOI 10	+0.3	N.D.	-0.2	-0.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.4	N.D.	-0.7	-0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.2	N.D.	-0.4	+0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	N.D.	-0.6	-0.3	-0.1
carbon source	D-Glucose (C)	+0.4	N.D.	-0.2	-0.3	-0.5
carbon source	Sebacic (C)	+0.2	N.D.	-0.2	+0.3	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	N.D.	-0.5	+0.2	-0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.5	N.D.	-0.6	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	N.D.	-0.3	-0.2	+0.4
carbon source	Phenylacetic 5 mM (C)	+0.4	N.D.	-0.3	+0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.1	N.D.	-0.5	+0.2	+0.7
carbon source	D-Glucose 20 mM (C)	+0.2	N.D.	-0.5	+0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	N.D.	-0.5	-0.0	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	N.D.	-0.5	+0.3	+0.3
phage	P. phyto PHYTO2 MOI 0.1	+0.2	N.D.	-0.2	+0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	N.D.	-0.3	-0.2	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	N.D.	-0.5	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	N.D.	-0.4	+0.2	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	N.D.	-0.5	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.0	N.D.	-0.4	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.5	N.D.	-0.3	+0.6	+0.4
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	N.D.	+0.2	+0.6	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	N.D.	-0.0	+0.1	+1.2