Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS13655 and BPHYT_RS13660 are separated by 58 nucleotidesBPHYT_RS13660 and BPHYT_RS13665 are separated by 83 nucleotidesBPHYT_RS13665 and BPHYT_RS13670 are separated by 287 nucleotidesBPHYT_RS13670 and BPHYT_RS13675 are separated by 2 nucleotides BPHYT_RS13655: BPHYT_RS13655 - GTP pyrophosphokinase, at 3,111,788 to 3,114,031 _RS13655 BPHYT_RS13660: BPHYT_RS13660 - aminoacrylate peracid reductase, at 3,114,090 to 3,114,443 _RS13660 BPHYT_RS13665: BPHYT_RS13665 - alpha/beta hydrolase, at 3,114,527 to 3,115,441 _RS13665 BPHYT_RS13670: BPHYT_RS13670 - succinyl-CoA:3-ketoacid-CoA transferase, at 3,115,729 to 3,116,370 _RS13670 BPHYT_RS13675: BPHYT_RS13675 - succinyl-CoA:3-ketoacid-CoA transferase, at 3,116,373 to 3,117,077 _RS13675
Group Condition BPHYT_RS13655 BPHYT_RS13660 BPHYT_RS13665 BPHYT_RS13670 BPHYT_RS13675
nitrogen source L-Alanine (N) -4.0 -0.1 +0.1 N.D. -0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.7 -0.0 +0.3 N.D. -2.1
carbon source D,L-Lactate (C) -2.2 +0.1 -0.0 N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.0 -1.5 -0.2 N.D. -0.4
carbon source D,L-Lactate (C) -2.0 +0.1 -0.1 N.D. +0.1
nitrogen source L-Lysine (N) -1.0 -0.2 -0.1 N.D. -0.3
supernatant control Vogels_fungal_media 0.1X -0.1 -0.7 -0.2 N.D. -0.3
nutrient L-Serine -1.2 -0.1 -0.1 N.D. +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.0 -1.0 +0.3 N.D. -0.5
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.5 +0.2 -0.4 N.D. -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.7 +0.3 N.D. -0.3
nitrogen source NAG (N) -0.9 +0.4 +0.2 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.1 +0.6 -0.4 N.D. -0.7
nitrogen source L-Isoleucine (N) -0.2 +0.3 +0.1 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.5 +0.5 N.D. -0.2
nitrogen source D-Alanine (N) -0.6 +0.3 +0.2 N.D. -0.3
vitamin With vitamins t1 -0.5 -0.2 +0.5 N.D. -0.3
carbon source Tween 20 (C) -0.9 +0.1 +0.7 N.D. -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.2 +0.6 N.D. -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 -0.4 +0.5 N.D. -0.6
carbon source L-Fucose (C) +0.7 -0.2 -0.2 N.D. -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 +0.6 -0.4 N.D. -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.4 +0.3 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.5 +0.4 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.2 +1.0 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +1.2 +0.1 N.D. -0.5
stress Nickel (II) chloride 1 mM -0.4 +0.9 +0.1 N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.1 +1.0 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +1.1 -0.1 N.D. +0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +2.2 +0.4 +0.2 N.D. -0.3
remove
BPHYT_RS13655
plot		 remove
BPHYT_RS13660
plot		 remove
BPHYT_RS13665		 remove
BPHYT_RS13670
plot		 remove
BPHYT_RS13675
plot