Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS13635 and BPHYT_RS13640 are separated by 246 nucleotidesBPHYT_RS13640 and BPHYT_RS13645 are separated by 103 nucleotidesBPHYT_RS13645 and BPHYT_RS13650 are separated by 252 nucleotidesBPHYT_RS13650 and BPHYT_RS13655 are separated by 131 nucleotides BPHYT_RS13635: BPHYT_RS13635 - 50S ribosomal protein L35, at 3,108,402 to 3,108,599 _RS13635 BPHYT_RS13640: BPHYT_RS13640 - translation initiation factor IF-3, at 3,108,846 to 3,109,316 _RS13640 BPHYT_RS13645: BPHYT_RS13645 - threonine--tRNA ligase, at 3,109,420 to 3,111,327 _RS13645 BPHYT_RS13650: BPHYT_RS13650 - tRNA-Val, at 3,111,580 to 3,111,656 _RS13650 BPHYT_RS13655: BPHYT_RS13655 - GTP pyrophosphokinase, at 3,111,788 to 3,114,031 _RS13655
Group Condition BPHYT_RS13635 BPHYT_RS13640 BPHYT_RS13645 BPHYT_RS13650 BPHYT_RS13655
nitrogen source L-Alanine (N) N.D. N.D. -0.6 N.D. -4.0
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. -4.3 N.D. -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. -3.4 N.D. +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -3.0 N.D. +0.0
nitrogen source L-Serine (N) N.D. N.D. -2.4 N.D. -0.5
carbon source D,L-Lactate (C) N.D. N.D. -0.5 N.D. -2.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -2.9 N.D. +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -2.8 N.D. +0.2
carbon source Tween 20 (C) N.D. N.D. -1.7 N.D. -0.9
carbon source D,L-Lactate (C) N.D. N.D. -0.5 N.D. -2.0
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. -2.0 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -2.5 N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. N.D. -2.6 N.D. +0.1
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.3 N.D. -0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. -2.2 N.D. -0.0
nitrogen source L-Proline (N) N.D. N.D. -2.2 N.D. -0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. N.D. -2.2 N.D. +0.0
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.2 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -2.2 N.D. +0.1
carbon source L-Fucose (C) N.D. N.D. -1.6 N.D. +0.7
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. -1.2 N.D. +2.2
nophagecontrol 24hr Phyto Lib Only N.D. N.D. +2.0 N.D. -0.4
phage 36hr PHYTO3 MOI 1 N.D. N.D. +2.0 N.D. -0.3
nophagecontrol 36hr Phyto Lib Only N.D. N.D. +2.0 N.D. -0.2
phage 36hr PHYTO1 MOI 1 N.D. N.D. +2.1 N.D. -0.2
nophagecontrol 24hr Phyto Lib Only N.D. N.D. +2.1 N.D. -0.2
phage 36hr PHYTO3 MOI 1 N.D. N.D. +2.2 N.D. -0.2
motility outer cut, LB soft agar motility assay N.D. N.D. +2.6 N.D. -0.1
motility outer cut, LB soft agar motility assay N.D. N.D. +2.6 N.D. -0.1
motility outer cut, LB soft agar motility assay N.D. N.D. +2.9 N.D. -0.3
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