Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS13595	BPHYT_RS13600	BPHYT_RS13605	BPHYT_RS13610	BPHYT_RS13615
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.4	-3.1	-3.1	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-3.9	+0.3	-1.8	-0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	-0.1	-4.1	-0.3	N.D.
phage	24hr PHYTO2 MOI 1	+0.0	-0.2	-3.4	-1.5	N.D.
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-3.4	+0.3	-3.9	+2.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.2	-3.2	-1.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-2.0	-0.3	-3.3	+1.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.5	-3.0	-0.4	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.6	-0.2	-3.6	-0.1	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.7	+0.2	-3.7	-0.2	N.D.
phage	PHYTO3 MOI 0.1	-0.4	-0.5	-2.4	-1.2	N.D.
carbon source	L-Fucose (C)	-0.2	+0.0	-4.2	-0.0	N.D.
supernatant control	Vogels_fungal_media 0.1X	+0.1	-0.7	-3.7	+0.3	N.D.
phage	24hr PHYTO9 MOI 0.1	-0.5	+0.2	-4.0	+0.3	N.D.
carbon source	Suberic (C)	-0.1	+0.3	-4.4	+0.3	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.1	+0.0	-4.5	+0.4	N.D.
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-4.3	-0.1	-3.0	+3.6	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.3	-0.3	-2.6	+0.5	N.D.
phage	36hr PHYTO4 MOI 1	-0.2	+0.3	-3.0	-0.8	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.5	-0.9	-3.7	+0.4	N.D.
phage	P. phyto PHYTO2 MOI 1	-0.2	+0.7	-4.0	+0.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	+0.2	-4.1	+0.5	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.7	-4.1	+0.0	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.1	+0.4	-3.7	+0.1	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-1.4	-0.1	-2.4	+0.6	N.D.
phage	36hr PHYTO6 MOI 0.1	-0.3	-0.9	-3.3	+1.4	N.D.
phage	36hr PHYTO10 MOI 10	-0.2	+0.8	-3.1	-0.2	N.D.
phage	24hr PHYTO6 MOI 1	+0.2	+0.5	-3.3	+1.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-1.2	+0.7	-2.3	+1.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.4	-2.2	+1.7	N.D.