Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS13510 and BPHYT_RS13515 are separated by 100 nucleotidesBPHYT_RS13515 and BPHYT_RS13520 overlap by 4 nucleotidesBPHYT_RS13520 and BPHYT_RS13525 are separated by 17 nucleotidesBPHYT_RS13525 and BPHYT_RS13530 are separated by 94 nucleotides BPHYT_RS13510: BPHYT_RS13510 - C4-dicarboxylate transporter, at 3,082,498 to 3,083,745 _RS13510 BPHYT_RS13515: BPHYT_RS13515 - 3-isopropylmalate dehydratase small subunit, at 3,083,846 to 3,084,457 _RS13515 BPHYT_RS13520: BPHYT_RS13520 - isopropylmalate isomerase, at 3,084,454 to 3,085,869 _RS13520 BPHYT_RS13525: BPHYT_RS13525 - alpha/beta hydrolase, at 3,085,887 to 3,086,765 _RS13525 BPHYT_RS13530: BPHYT_RS13530 - LysR family transcriptional regulator, at 3,086,860 to 3,087,762 _RS13530
Group Condition BPHYT_RS13510 BPHYT_RS13515 BPHYT_RS13520 BPHYT_RS13525 BPHYT_RS13530
phage 36hr PHYTO1 MOI 10 +0.2 -1.3 -0.3 N.D. N.D.
pH LB, pH4 -0.3 -0.6 -0.4 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.7 -0.6 N.D. N.D.
phage 36hr PHYTO1 MOI 10 -0.0 -1.3 +0.3 N.D. N.D.
lb_dap plate control LB_DAP agar plate, outgrowth in LB -0.1 +0.3 -1.0 N.D. N.D.
phage 24hr PHYTO6 MOI 10 +0.3 -0.6 -0.4 N.D. N.D.
phage 24hr PHYTO6 MOI 1 +0.4 -0.7 -0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.4 -0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 +0.4 -0.8 N.D. N.D.
phage 36hr PHYTO2 MOI 1 +0.2 -0.9 +0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -0.1 -0.8 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.5 -0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.6 -0.7 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.6 +0.7 N.D. N.D.
lb_dap plate control LB_DAP agar plate, outgrowth in LB -0.3 -0.5 +0.6 N.D. N.D.
phage P. phyto PHYTO2 MOI 1 +0.4 -0.7 +0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.6 +0.4 -0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.8 +0.3 -0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.9 -0.1 -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 +1.0 -0.3 N.D. N.D.
carbon source Tween 20 (C) -0.2 +1.0 +0.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 -0.2 +0.4 N.D. N.D.
carbon source Malonic (C) -0.2 +0.6 +0.6 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.1 +0.9 +0.3 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.0 +1.0 +0.1 N.D. N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.0 +0.9 +0.3 N.D. N.D.
carbon source Sebacic (C) -0.2 +0.5 +0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +0.3 +0.9 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.0 +0.7 +1.0 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.4 +2.0 N.D. N.D.
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