Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS13445 and BPHYT_RS13450 are separated by 60 nucleotidesBPHYT_RS13450 and BPHYT_RS13455 are separated by 297 nucleotidesBPHYT_RS13455 and BPHYT_RS13460 are separated by 22 nucleotidesBPHYT_RS13460 and BPHYT_RS13465 are separated by 45 nucleotides BPHYT_RS13445: BPHYT_RS13445 - hypothetical protein, at 3,069,046 to 3,069,246 _RS13445 BPHYT_RS13450: BPHYT_RS13450 - GntR family transcriptional regulator, at 3,069,307 to 3,070,698 _RS13450 BPHYT_RS13455: BPHYT_RS13455 - methyl-accepting chemotaxis protein, at 3,070,996 to 3,072,795 _RS13455 BPHYT_RS13460: BPHYT_RS13460 - chemotaxis protein, at 3,072,818 to 3,074,398 _RS13460 BPHYT_RS13465: BPHYT_RS13465 - hypothetical protein, at 3,074,444 to 3,074,824 _RS13465
Group Condition BPHYT_RS13445 BPHYT_RS13450 BPHYT_RS13455 BPHYT_RS13460 BPHYT_RS13465
phage 36hr PHYTO10 MOI 10 N.D. -2.9 -0.4 -0.4 +0.1
phage 24hr PHYTO2 MOI 1 N.D. -3.1 -0.1 -0.3 +0.1
phage 36hr PHYTO1 MOI 1 N.D. -2.9 -0.5 +0.4 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -3.6 -0.4 +1.2 -0.2
phage 24hr PHYTO6 MOI 10 N.D. -2.5 +0.1 -0.1 -0.5
phage 24hr PHYTO11 MOI 1 N.D. -3.1 +0.3 -0.1 +0.3
phage 24hr PHYTO11 MOI 0.1 N.D. -1.8 -0.4 -0.6 +0.2
phage 24hr PHYTO1 MOI 10 N.D. -2.4 -0.5 +0.4 +0.1
phage 36hr PHYTO6 MOI 10 N.D. -2.2 +0.1 +0.2 -0.3
phage P. phyto PHYTO2 MOI 1 N.D. -2.1 -0.5 +0.1 +0.1
phage 36hr PHYTO6 MOI 0.1 N.D. -2.4 +0.0 -0.1 +0.3
phage 36hr PHYTO3 MOI 0.1 N.D. -2.5 +0.2 -0.1 +0.1
phage 36hr PHYTO7 MOI 1 N.D. -1.6 -0.7 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.3 -0.3 -1.1 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -1.9 -0.2 -0.2 +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. -2.6 +0.3 +0.4 +0.4
phage P. phyto corn MOI 1 N.D. -1.7 -0.2 +0.1 +0.3
phage 24hr PHYTO4 MOI 10 N.D. -1.9 -0.2 +0.1 +0.5
phage 24hr PHYTO2 MOI 0.1 N.D. -1.8 +0.3 -0.2 +0.7
phage 36hr PHYTO4 MOI 0.1 N.D. -1.5 -0.3 +0.6 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.7 -0.2 +0.5 +0.4
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.5 +0.8 -0.8 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. -1.4 +0.4 +0.7 +0.4
supernatant control Vogels_fungal_media 0.1X N.D. -1.3 +0.6 +0.6 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +1.3 +0.4 -0.9 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.8 +0.8 -0.6 -0.4
vitamin With vitamins t1 N.D. +1.0 +0.6 +0.1 -0.8
carbon source Malonic (C) N.D. -1.7 +0.3 -0.2 +2.4
supernatant control Vogels_fungal_media 0.1X N.D. +0.8 +0.8 -0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. +0.8 +1.0 +0.0 +0.6
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