Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS13315 and BPHYT_RS13320 are separated by 135 nucleotidesBPHYT_RS13320 and BPHYT_RS13325 are separated by 341 nucleotidesBPHYT_RS13325 and BPHYT_RS13330 overlap by 23 nucleotidesBPHYT_RS13330 and BPHYT_RS13335 are separated by 56 nucleotides BPHYT_RS13315: BPHYT_RS13315 - dihydropyrimidine dehydrogenase subunit A, at 3,040,215 to 3,041,564 _RS13315 BPHYT_RS13320: BPHYT_RS13320 - allantoate amidohydrolase, at 3,041,700 to 3,042,980 _RS13320 BPHYT_RS13325: BPHYT_RS13325 - TetR family transcriptional regulator, at 3,043,322 to 3,044,032 _RS13325 BPHYT_RS13330: BPHYT_RS13330 - prevent-host-death protein, at 3,044,010 to 3,044,240 _RS13330 BPHYT_RS13335: BPHYT_RS13335 - benzoyl-CoA oxygenase, at 3,044,297 to 3,045,538 _RS13335
Group Condition BPHYT_RS13315 BPHYT_RS13320 BPHYT_RS13325 BPHYT_RS13330 BPHYT_RS13335
nitrogen source Uridine (N) -3.5 -5.1 -0.3 N.D. N.D.
phage 36hr PHYTO1 MOI 10 -1.4 -3.8 -0.4 N.D. N.D.
phage 36hr PHYTO1 MOI 10 -0.1 -3.8 -1.1 N.D. N.D.
phage 24hr PHYTO3 MOI 1 -0.8 -2.2 -1.6 N.D. N.D.
phage 24hr PHYTO3 MOI 10 -1.3 -1.2 -1.6 N.D. N.D.
phage 36hr PHYTO3 MOI 1 -1.4 -2.5 -0.3 N.D. N.D.
phage 24hr PHYTO1 MOI 10 -0.0 -2.2 -1.9 N.D. N.D.
phage P. phyto PHYTO2 MOI 1 -1.0 -2.1 -0.7 N.D. N.D.
phage 24hr PHYTO2 MOI 0.1 -0.1 -3.7 +0.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -2.7 -1.0 N.D. N.D.
phage 24hr PHYTO6 MOI 0.1 -0.6 -2.3 -0.9 N.D. N.D.
nitrogen source L-Serine (N) -0.1 -1.8 -1.2 N.D. N.D.
phage 24hr PHYTO MOI 0.1 -0.1 -1.4 -1.6 N.D. N.D.
phage 24hr PHYTO6 MOI 1 -0.7 -2.3 +0.2 N.D. N.D.
carbon source adipate (C) -1.1 +0.2 -1.9 N.D. N.D.
vitamin With vitamins t2 +0.4 -2.8 -0.3 N.D. N.D.
phage 24hr PHYTO4 MOI 10 +0.6 -3.1 +0.1 N.D. N.D.
phage 24hr PHYTO4 MOI 0.1 +0.9 -3.8 +0.4 N.D. N.D.
phage 36hr PHYTO7 MOI 1 -1.9 -1.3 +1.0 N.D. N.D.
phage 36hr PHYTO2 MOI 0.1 -0.1 -2.3 +0.6 N.D. N.D.
phage 24hr PHYTO1 MOI 1 +0.6 -2.3 +0.1 N.D. N.D.
phage 24hr PHYTO9 MOI 0.1 -0.8 -1.7 +0.9 N.D. N.D.
vitamin No vitamins t2 +1.0 -1.8 -0.6 N.D. N.D.
phage 36hr PHYTO11 MOI 1 +0.3 -2.2 +0.9 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.6 -2.0 +0.7 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -1.1 +0.4 +1.6 N.D. N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.9 +2.2 -0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 +1.8 +0.9 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 +3.8 -0.3 N.D. N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.8 +0.8 +0.9 N.D. N.D.
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