Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS13275	BPHYT_RS13280	BPHYT_RS13285	BPHYT_RS13290	BPHYT_RS13295
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-3.2	-0.9	-0.3	+0.5	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-0.5	-0.3	+0.1	-0.9
phage	36hr PHYTO1 MOI 1	-0.6	+0.0	-1.1	-0.1	+0.3
phage	24hr PHYTO3 MOI 10	-0.1	+0.2	-1.7	+0.1	-0.1
phage	24hr PHYTO11 MOI 0.1	-0.7	+0.3	-0.3	+0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.5	-0.6	-0.2	-0.8
phage	36hr PHYTO6 MOI 1	-0.2	-0.1	-1.4	+0.2	+0.3
phage	36hr PHYTO6 MOI 10	+0.4	+0.2	-1.4	-0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.6	-0.3	-0.3	-0.5
phage	36hr PHYTO3 MOI 1	+0.3	+0.3	-0.9	-0.0	-0.6
phage	36hr PHYTO10 MOI 10	-0.7	-0.3	-0.5	+0.4	+0.4
phage	24hr PHYTO9 MOI 0.1	+0.3	-0.4	-1.0	+0.4	-0.2
nitrogen source	L-Isoleucine (N)	+0.4	-2.3	+0.9	+0.1	+0.4
phage	36hr PHYTO2 MOI 1	+0.5	+0.3	-1.0	+0.1	-0.4
nitrogen source	L-Serine (N)	+0.4	-0.3	-0.7	+0.1	+0.4
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.4	-0.5	+0.5	+0.5	+0.2
carbon source	Malonic (C)	+0.4	-0.6	+0.8	-0.3	+0.2
carbon source	Xylitol (C)	+0.4	-0.1	-0.6	+0.4	+0.6
carbon source	Protocatechuic Acid (C)	+0.3	-0.5	+0.9	-0.0	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-0.2	+1.1	+0.2	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.2	-0.2	+0.7	-0.2	+1.0
nitrogen source	L-Lysine (N)	+0.1	+0.2	+1.4	+0.2	-0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+1.2	-0.3	-0.0	+0.4	-0.1
nitrogen source	L-Glutamic (N)	+0.4	-0.4	+0.2	+0.7	+0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+0.3	-0.5	+0.1	+2.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.2	+1.0	+0.2	+0.5
phage	24hr PHYTO10 MOI 1	-0.4	+0.4	+0.1	+0.9	+0.7
motility	outer cut, LB soft agar motility assay	+1.0	-0.1	+0.2	-0.0	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	+0.2	+0.6	+0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.1	+0.6	+0.4	+2.1