Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS13210 and BPHYT_RS13215 are separated by 440 nucleotidesBPHYT_RS13215 and BPHYT_RS13220 are separated by 364 nucleotidesBPHYT_RS13220 and BPHYT_RS13225 are separated by 256 nucleotidesBPHYT_RS13225 and BPHYT_RS13230 are separated by 155 nucleotides BPHYT_RS13210: BPHYT_RS13210 - hypothetical protein, at 3,013,734 to 3,014,579 _RS13210 BPHYT_RS13215: BPHYT_RS13215 - elongation factor GreAB, at 3,015,020 to 3,015,430 _RS13215 BPHYT_RS13220: BPHYT_RS13220 - phosphomethylpyrimidine synthase, at 3,015,795 to 3,017,726 _RS13220 BPHYT_RS13225: BPHYT_RS13225 - hypothetical protein, at 3,017,983 to 3,018,195 _RS13225 BPHYT_RS13230: BPHYT_RS13230 - hypothetical protein, at 3,018,351 to 3,018,842 _RS13230
Group Condition BPHYT_RS13210 BPHYT_RS13215 BPHYT_RS13220 BPHYT_RS13225 BPHYT_RS13230
carbon source L-Phenylalanine (C) +0.2 N.D. -5.8 N.D. -0.3
carbon source Tween 20 (C) +0.0 N.D. -5.7 N.D. +0.0
vitamin No vitamins t2 +0.0 N.D. -5.9 N.D. +0.3
nitrogen source L-Alanine (N) +0.3 N.D. -5.8 N.D. +0.2
carbon source L-Fucose (C) +0.0 N.D. -5.4 N.D. +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.2 N.D. -5.3 N.D. -0.0
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.3 N.D. -4.7 N.D. -0.2
carbon source m-Inositol (C) +0.2 N.D. -5.2 N.D. -0.1
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.9 N.D. -4.2 N.D. +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.1 N.D. -4.5 N.D. -0.2
vitamin With vitamins t2 -0.2 N.D. -4.6 N.D. +0.0
supernatant control Vogels_fungal_media 0.1X +0.0 N.D. -4.8 N.D. +0.2
supernatant control Vogels_fungal_media; pH 5.5 -0.3 N.D. -4.4 N.D. +0.4
carbon source L-Tryptophan (C) +0.2 N.D. -4.4 N.D. -0.2
carbon source L-Glutamine (C) -0.3 N.D. -3.8 N.D. -0.2
supernatant control Vogels_fungal_media 0.1X -0.6 N.D. -3.7 N.D. +0.2
carbon source L-Rhamnose (C) -0.1 N.D. -3.8 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.1 N.D. -4.0 N.D. -0.1
carbon source L-Proline (C) -0.2 N.D. -3.7 N.D. -0.2
carbon source pyruvate (C) +0.1 N.D. -3.8 N.D. -0.2
carbon source D-Gluconic Acid (C) -0.0 N.D. -3.9 N.D. +0.1
carbon source Dodecandioic (C) +0.2 N.D. -4.0 N.D. -0.1
nitrogen source L-Proline (N) +0.1 N.D. -4.0 N.D. +0.0
nitrogen source L-Lysine (N) +0.1 N.D. -3.8 N.D. -0.0
carbon source Sebacic (C) -0.2 N.D. -3.5 N.D. +0.0
carbon source D-Sorbitol (C) +0.0 N.D. -3.6 N.D. -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.3 N.D. -3.8 N.D. +0.1
carbon source Azelaic (C) +0.3 N.D. -3.7 N.D. +0.1
nitrogen source L-Glutamine (N) +0.4 N.D. -3.7 N.D. -0.1
nitrogen source L-Asparagine (N) +0.6 N.D. -3.6 N.D. -0.0
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BPHYT_RS13210
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BPHYT_RS13215
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BPHYT_RS13225
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BPHYT_RS13230
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