Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS13135 and BPHYT_RS13140 are separated by 209 nucleotidesBPHYT_RS13140 and BPHYT_RS13145 are separated by 28 nucleotidesBPHYT_RS13145 and BPHYT_RS13150 are separated by 20 nucleotidesBPHYT_RS13150 and BPHYT_RS13155 are separated by 291 nucleotides BPHYT_RS13135: BPHYT_RS13135 - hypothetical protein, at 3,000,568 to 3,001,053 _RS13135 BPHYT_RS13140: BPHYT_RS13140 - MFS transporter, at 3,001,263 to 3,002,462 _RS13140 BPHYT_RS13145: BPHYT_RS13145 - chemotaxis protein CheY, at 3,002,491 to 3,002,919 _RS13145 BPHYT_RS13150: BPHYT_RS13150 - hisitidine kinase, at 3,002,940 to 3,003,572 _RS13150 BPHYT_RS13155: BPHYT_RS13155 - bacterioferritin, at 3,003,864 to 3,004,436 _RS13155
Group Condition BPHYT_RS13135 BPHYT_RS13140 BPHYT_RS13145 BPHYT_RS13150 BPHYT_RS13155
phage 36hr PHYTO10 MOI 10 -0.5 -0.7 N.D. N.D. -0.8
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.4 -1.1 N.D. N.D. -0.3
phage 24hr PHYTO3 MOI 0.1 -0.2 -0.8 N.D. N.D. -0.7
phage P. phyto PHYTO2 MOI 1 +0.0 -1.1 N.D. N.D. -0.6
phage 24hr PHYTO6 MOI 0.1 -0.4 -0.5 N.D. N.D. -0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 -1.2 N.D. N.D. -0.1
phage 24hr PHYTO6 MOI 1 -0.2 -1.1 N.D. N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.3 -0.8 N.D. N.D. -0.4
phage 36hr PHYTO4 MOI 1 +0.1 -0.9 N.D. N.D. -0.5
phage 36hr PHYTO8 MOI 0.1 -0.1 -0.7 N.D. N.D. -0.5
phage 36hr PHYTO1 MOI 10 +0.2 -1.1 N.D. N.D. -0.4
carbon source D-Glucose (C) +0.1 -0.4 N.D. N.D. -0.8
phage 24hr PHYTO6 MOI 10 +0.1 -0.4 N.D. N.D. -0.8
phage 36hr PHYTO1 MOI 1 -0.4 +0.1 N.D. N.D. -0.7
carbon source Tween 20 (C) -0.5 -0.6 N.D. N.D. +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.3 -1.0 N.D. N.D. -0.2
phage 24hr PHYTO MOI 0.1 +0.2 -0.6 N.D. N.D. -0.5
phage 36hr PHYTO2 MOI 1 +0.3 -0.7 N.D. N.D. -0.3
phage 36hr PHYTO6 MOI 0.1 +0.4 -0.5 N.D. N.D. -0.6
phage 36hr PHYTO10 MOI 10 +0.4 -0.7 N.D. N.D. -0.4
phage 36hr PHYTO4 MOI 0.1 +0.4 -0.3 N.D. N.D. -0.7
phage 24hr PHYTO4 MOI 10 +0.4 -0.9 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 +0.5 N.D. N.D. -0.4
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 -0.4 +0.6 N.D. N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 +0.3 N.D. N.D. +0.6
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 +0.2 N.D. N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.8 N.D. N.D. -0.3
vitamin With vitamins t2 +0.7 +0.5 N.D. N.D. +0.3
temperature LB 37C -0.0 +1.7 N.D. N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +0.3 N.D. N.D. +0.9
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