Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS13115	BPHYT_RS13120	BPHYT_RS13125	BPHYT_RS13130	BPHYT_RS13135
phage	36hr PHYTO11 MOI 1	-0.4	-0.5	-0.3	-4.3	+0.1
phage	P. phyto PHYTO2 MOI 1	-0.7	-0.3	-0.7	-1.7	+0.1
nophagecontrol	24hr Phyto Lib only	-0.3	-0.2	+0.3	-2.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.0	+0.1	-1.6	-0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.0	-1.0	-1.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.4	-0.2	+0.2	-2.4	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.1	+0.3	-1.9	-0.2
nitrogen source	Putrescine (N)	+0.4	-0.1	-0.0	-1.8	-0.0
nitrogen source	L-Isoleucine (N)	+0.1	-0.8	+0.4	-1.4	+0.2
phage	36hr PHYTO11 MOI 0.1	-0.4	-0.0	+0.3	-1.5	+0.3
phage	24hr PHYTO8 MOI 1	+0.2	-0.3	+0.4	-1.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.2	-0.5	-0.9	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.2	+0.1	-1.2	-0.4
phage	36hr PHYTO9 MOI 1	+0.7	-0.2	-0.2	-1.1	-0.2
carbon source	Sebacic (C)	+0.6	-0.1	+0.2	-1.1	-0.6
phage	24hr PHYTO3 MOI 10	+0.4	+0.1	-1.0	-0.6	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	+0.2	-0.1	-1.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-0.1	-0.7	+1.5	-0.3
phage	24hr PHYTO7 MOI 10	+0.3	-0.4	+0.8	+0.3	-0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.2	-0.2	-0.1	+2.3	-0.2
supernatant control	Vogels_fungal_media 0.1X	+0.3	-0.2	+0.8	+0.8	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.5	-0.3	+0.8	+0.6	+0.4
carbon source	Malonic (C)	-0.2	+0.1	+0.3	+1.9	-0.3
vitamin	With vitamins t2	-0.2	+0.0	+0.2	+1.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.4	+0.1	+0.4	+1.5	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+1.0	-0.0	+1.4	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.7	-0.0	+0.1	+0.8	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.1	-0.0	+0.0	+2.9	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.1	+0.2	-0.0	+0.6	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	+0.2	+0.9	+1.3	+0.2