Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12960 and BPHYT_RS12965 are separated by 147 nucleotidesBPHYT_RS12965 and BPHYT_RS12970 are separated by 58 nucleotidesBPHYT_RS12970 and BPHYT_RS12975 are separated by 591 nucleotidesBPHYT_RS12975 and BPHYT_RS12980 are separated by 236 nucleotides BPHYT_RS12960: BPHYT_RS12960 - membrane protein, at 2,958,719 to 2,959,552 _RS12960 BPHYT_RS12965: BPHYT_RS12965 - fatty acid hydroxylase, at 2,959,700 to 2,960,698 _RS12965 BPHYT_RS12970: BPHYT_RS12970 - hypothetical protein, at 2,960,757 to 2,961,776 _RS12970 BPHYT_RS12975: BPHYT_RS12975 - membrane protein, at 2,962,368 to 2,965,001 _RS12975 BPHYT_RS12980: BPHYT_RS12980 - ATP-dependent helicase, at 2,965,238 to 2,969,530 _RS12980
Group Condition BPHYT_RS12960 BPHYT_RS12965 BPHYT_RS12970 BPHYT_RS12975 BPHYT_RS12980
nitrogen source D-Alanine (N) -0.1 -3.0 -3.8 +0.0 +0.2
carbon source D-Alanine (C) +0.1 -1.5 -1.6 +0.0 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 -0.6 -1.0 -0.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.1 -0.4 -0.4 -0.3 -0.7
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.3 -0.3 -0.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.7 -0.7 +0.2 -0.4
stress Bacitracin 0.25 mg/ml -0.4 -0.6 -0.5 +0.1 -0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.0 -0.9 -0.7 +0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.8 -0.5 +0.2 -0.1
stress A22 0.005 mg/ml +0.1 -0.7 -0.6 -0.1 +0.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.6 -0.5 +0.3 -0.4
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.0 -0.3 -1.0 +0.1 +0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.2 -0.1 +0.4 -0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.3 -0.2 +0.5 -0.2
phage P. phyto PHYTO2 MOI 0.1 -0.2 +0.5 -0.4 -0.0 -0.5
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.2 -0.9 -0.4 +0.5 +0.1
phage P. phyto PHYTO2 MOI 1 -0.3 +0.1 -0.7 +0.1 +0.3
phage 36hr PHYTO2 MOI 1 -0.6 +0.4 +0.1 -0.2 -0.2
phage 24hr PHYTO6 MOI 0.1 +0.1 +0.5 -0.2 -0.5 -0.4
phage 36hr PHYTO4 MOI 1 -0.3 +0.7 -0.3 -0.2 -0.3
phage 24hr PHYTO7 MOI 1 -0.2 +0.4 -0.5 -0.2 +0.4
phage 24hr PHYTO11 MOI 1 +0.2 +0.6 -0.1 -0.5 -0.2
phage 24hr PHYTO6 MOI 10 -0.2 +0.4 +0.4 -0.1 -0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.2 +0.4 +0.3 -0.2 -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.5 +0.5 +0.6 -0.2 -0.1
phage 36hr PHYTO9 MOI 1 +0.5 +0.5 -0.1 -0.5 +0.1
phage 24hr PHYTO11 MOI 0.1 -0.3 +0.5 -0.2 +0.1 +0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 +0.8 +0.8 -0.2 -0.1
carbon source Phenylacetic 5 mM (C) -0.2 +0.9 +0.9 -0.0 +0.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 +0.9 +1.0 +0.0 -0.0
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