Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12925 and BPHYT_RS12930 are separated by 21 nucleotidesBPHYT_RS12930 and BPHYT_RS12935 are separated by 114 nucleotidesBPHYT_RS12935 and BPHYT_RS12940 are separated by 44 nucleotidesBPHYT_RS12940 and BPHYT_RS12945 are separated by 210 nucleotides BPHYT_RS12925: BPHYT_RS12925 - exodeoxyribonuclease III, at 2,949,305 to 2,950,081 _RS12925 BPHYT_RS12930: BPHYT_RS12930 - peptidase S9, at 2,950,103 to 2,952,202 _RS12930 BPHYT_RS12935: BPHYT_RS12935 - chemotaxis protein CheY, at 2,952,317 to 2,953,834 _RS12935 BPHYT_RS12940: BPHYT_RS12940 - signal transduction histidine kinase, at 2,953,879 to 2,955,021 _RS12940 BPHYT_RS12945: BPHYT_RS12945 - glutamine synthetase, at 2,955,232 to 2,956,647 _RS12945
Group Condition BPHYT_RS12925 BPHYT_RS12930 BPHYT_RS12935 BPHYT_RS12940 BPHYT_RS12945
nitrogen source Putrescine (N) -1.0 +0.0 -5.4 -6.0 N.D.
nitrogen source Uridine (N) +1.0 -0.0 -7.0 -5.4 N.D.
nitrogen source Carnitine Hydrochloride (N) +0.8 -0.1 -6.5 -5.0 N.D.
nitrogen source L-Proline (N) -0.1 -0.0 -4.6 -5.6 N.D.
nitrogen source NAG (N) +0.2 -0.1 -5.3 -4.1 N.D.
nitrogen source L-Lysine (N) -1.1 +0.1 -3.9 -4.2 N.D.
nitrogen source L-Phenylalanine (N) -0.9 +0.2 -3.2 -4.9 N.D.
nitrogen source L-Serine (N) -0.1 +0.1 -5.6 -3.0 N.D.
nitrogen source D-Alanine (N) -0.0 +0.0 -4.0 -3.2 N.D.
carbon source D-Glucose (C) -2.6 -0.2 -1.9 -1.9 N.D.
nitrogen source L-Isoleucine (N) +0.6 -0.1 -3.0 -3.7 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -1.8 -0.1 -2.6 -1.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -4.4 -0.5 -0.4 -0.7 N.D.
nitrogen source L-Alanine (N) +0.8 -0.0 -3.8 -2.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +1.2 -0.2 -3.1 -3.3 N.D.
vitamin With vitamins t2 +0.6 -0.3 -2.5 -3.1 N.D.
carbon source D-Glucose (C) -0.9 -0.3 -2.1 -1.6 N.D.
carbon source Tween 20 (C) +1.5 +0.2 -2.9 -3.7 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -2.5 -0.0 -1.2 -0.6 N.D.
carbon source L-Malic (C) -0.8 -0.0 -1.9 -1.6 N.D.
nitrogen source L-Citrulline (N) -0.6 +0.2 -2.1 -1.9 N.D.
carbon source L-Alanine (C) -0.4 -0.2 -2.2 -1.5 N.D.
carbon source D-Fructose (C) -1.0 -0.1 -1.6 -1.7 N.D.
carbon source D,L-Lactate (C) -2.3 -0.1 -0.9 -0.9 N.D.
nitrogen source L-Glutamic (N) +0.2 -0.0 -2.4 -1.8 N.D.
nutrient L-Serine -1.0 +0.2 -1.6 -1.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -4.4 +0.3 -0.0 +0.1 N.D.
nitrogen source Ammonium chloride (N) -1.1 +0.1 -1.9 -1.0 N.D.
vitamin No vitamins t2 +1.5 -0.2 -2.0 -2.1 N.D.
vitamin No vitamins t1 +2.8 -0.2 -1.0 -0.9 N.D.
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BPHYT_RS12925
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BPHYT_RS12930
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BPHYT_RS12945
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