Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12920 and BPHYT_RS12925 are separated by 170 nucleotidesBPHYT_RS12925 and BPHYT_RS12930 are separated by 21 nucleotidesBPHYT_RS12930 and BPHYT_RS12935 are separated by 114 nucleotidesBPHYT_RS12935 and BPHYT_RS12940 are separated by 44 nucleotides BPHYT_RS12920: BPHYT_RS12920 - hypothetical protein, at 2,948,847 to 2,949,134 _RS12920 BPHYT_RS12925: BPHYT_RS12925 - exodeoxyribonuclease III, at 2,949,305 to 2,950,081 _RS12925 BPHYT_RS12930: BPHYT_RS12930 - peptidase S9, at 2,950,103 to 2,952,202 _RS12930 BPHYT_RS12935: BPHYT_RS12935 - chemotaxis protein CheY, at 2,952,317 to 2,953,834 _RS12935 BPHYT_RS12940: BPHYT_RS12940 - signal transduction histidine kinase, at 2,953,879 to 2,955,021 _RS12940
Group Condition BPHYT_RS12920 BPHYT_RS12925 BPHYT_RS12930 BPHYT_RS12935 BPHYT_RS12940
nitrogen source Putrescine (N) +0.2 -1.0 +0.0 -5.4 -6.0
nitrogen source Uridine (N) +0.5 +1.0 -0.0 -7.0 -5.4
nitrogen source Carnitine Hydrochloride (N) +0.2 +0.8 -0.1 -6.5 -5.0
nitrogen source L-Proline (N) +0.2 -0.1 -0.0 -4.6 -5.6
nitrogen source L-Serine (N) -0.2 -0.1 +0.1 -5.6 -3.0
nitrogen source NAG (N) +0.6 +0.2 -0.1 -5.3 -4.1
nitrogen source L-Lysine (N) +0.7 -1.1 +0.1 -3.9 -4.2
nitrogen source L-Phenylalanine (N) +0.7 -0.9 +0.2 -3.2 -4.9
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.8 -1.8 -0.1 -2.6 -1.6
nitrogen source D-Alanine (N) +0.4 -0.0 +0.0 -4.0 -3.2
carbon source D-Glucose (C) -0.0 -2.6 -0.2 -1.9 -1.9
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -4.4 -0.5 -0.4 -0.7
nitrogen source L-Isoleucine (N) +0.7 +0.6 -0.1 -3.0 -3.7
carbon source Tween 20 (C) -0.6 +1.5 +0.2 -2.9 -3.7
carbon source D-Glucose (C) -0.4 -0.9 -0.3 -2.1 -1.6
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +0.4 +1.2 -0.2 -3.1 -3.3
nitrogen source L-Alanine (N) +0.7 +0.8 -0.0 -3.8 -2.5
vitamin With vitamins t2 +0.6 +0.6 -0.3 -2.5 -3.1
carbon source L-Malic (C) +0.0 -0.8 -0.0 -1.9 -1.6
carbon source D-Fructose (C) +0.1 -1.0 -0.1 -1.6 -1.7
carbon source L-Alanine (C) +0.1 -0.4 -0.2 -2.2 -1.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.3 -2.5 -0.0 -1.2 -0.6
nutrient L-Serine +0.0 -1.0 +0.2 -1.6 -1.5
nitrogen source L-Citrulline (N) +0.4 -0.6 +0.2 -2.1 -1.9
nitrogen source L-Glutamic (N) +0.1 +0.2 -0.0 -2.4 -1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 -4.4 +0.3 -0.0 +0.1
nitrogen source Ammonium chloride (N) +0.7 -1.1 +0.1 -1.9 -1.0
vitamin No vitamins t2 -0.0 +1.5 -0.2 -2.0 -2.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 -2.8 -0.2 +0.2 -0.5
vitamin No vitamins t1 +0.5 +2.8 -0.2 -1.0 -0.9
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BPHYT_RS12920
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BPHYT_RS12925
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