Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12855 and BPHYT_RS12860 are separated by 40 nucleotidesBPHYT_RS12860 and BPHYT_RS12865 are separated by 395 nucleotidesBPHYT_RS12865 and BPHYT_RS12870 are separated by 248 nucleotidesBPHYT_RS12870 and BPHYT_RS12875 are separated by 325 nucleotides BPHYT_RS12855: BPHYT_RS12855 - hypothetical protein, at 2,932,988 to 2,933,338 _RS12855 BPHYT_RS12860: BPHYT_RS12860 - hypothetical protein, at 2,933,379 to 2,934,320 _RS12860 BPHYT_RS12865: BPHYT_RS12865 - bifunctional protein FolD, at 2,934,716 to 2,935,576 _RS12865 BPHYT_RS12870: BPHYT_RS12870 - acetylase, at 2,935,825 to 2,936,940 _RS12870 BPHYT_RS12875: BPHYT_RS12875 - oligopeptidase A, at 2,937,266 to 2,939,374 _RS12875
Group Condition BPHYT_RS12855 BPHYT_RS12860 BPHYT_RS12865 BPHYT_RS12870 BPHYT_RS12875
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.8 -0.0 N.D. +0.2 -1.6
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -1.6 +0.1 N.D. -0.2 -0.3
nophagecontrol 24hr Phyto Lib Only -2.2 +0.3 N.D. +0.1 -0.0
phage 36hr PHYTO6 MOI 10 -1.6 +0.2 N.D. +0.1 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.7 +0.2 N.D. -0.0 +0.0
carbon source Phenylacetic 5 mM (C) -0.6 -0.1 N.D. +0.2 -0.8
phage 36hr PHYTO10 MOI 10 -1.3 +0.1 N.D. +0.4 -0.5
carbon source Sebacic (C) -1.4 +0.1 N.D. +0.1 -0.0
phage 36hr PHYTO10 MOI 1 -1.3 +0.2 N.D. +0.1 -0.2
carbon source 2-Deoxy-D-Ribose (C) -0.6 +0.2 N.D. -0.2 -0.6
phage 24hr PHYTO1 MOI 1 -1.3 +0.1 N.D. +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.1 +0.0 N.D. -0.2 +0.2
phage 24hr PHYTO4 MOI 10 -1.4 +0.1 N.D. +0.5 -0.3
phage 24hr PHYTO9 MOI 10 -1.3 +0.4 N.D. +0.3 -0.4
phage 36hr PHYTO6 MOI 0.1 -0.9 +0.2 N.D. +0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.1 -0.0 N.D. +0.2 +0.3
phage P. phyto corn MOI 1 -0.9 -0.1 N.D. +0.5 -0.1
phage 36hr PHYTO6 MOI 1 -0.9 +0.3 N.D. +0.2 -0.2
phage 36hr PHYTO3 MOI 0.1 -1.0 +0.3 N.D. +0.2 -0.1
phage 36hr PHYTO1 MOI 10 -0.8 +0.2 N.D. +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 +0.2 N.D. -0.1 +0.4
phage 24hr PHYTO11 MOI 1 -0.6 +0.3 N.D. +0.6 -0.1
nutrient L-Serine +1.0 +0.0 N.D. -0.2 -0.6
phage 36hr PHYTO2 MOI 1 -0.6 +0.5 N.D. +0.5 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.6 -0.0 N.D. +0.1 +0.9
vitamin With vitamins t1 +1.0 -0.1 N.D. +0.1 -0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +0.2 N.D. +0.2 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.2 N.D. +0.3 -0.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.9 +0.1 N.D. +0.2 -0.3
phage 24hr PHYTO4 MOI 0.1 +1.0 +0.3 N.D. +0.2 -0.2
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