Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12835 and BPHYT_RS12840 are separated by 87 nucleotidesBPHYT_RS12840 and BPHYT_RS12845 are separated by 275 nucleotidesBPHYT_RS12845 and BPHYT_RS12850 overlap by 4 nucleotidesBPHYT_RS12850 and BPHYT_RS12855 are separated by 223 nucleotides BPHYT_RS12835: BPHYT_RS12835 - dihydrolipoamide acetyltransferase, at 2,924,895 to 2,926,547 _RS12835 BPHYT_RS12840: BPHYT_RS12840 - pyruvate dehydrogenase, at 2,926,635 to 2,929,331 _RS12840 BPHYT_RS12845: BPHYT_RS12845 - ATPase, at 2,929,607 to 2,932,123 _RS12845 BPHYT_RS12850: BPHYT_RS12850 - LuxR family transcriptional regulator, at 2,932,120 to 2,932,764 _RS12850 BPHYT_RS12855: BPHYT_RS12855 - hypothetical protein, at 2,932,988 to 2,933,338 _RS12855
Group Condition BPHYT_RS12835 BPHYT_RS12840 BPHYT_RS12845 BPHYT_RS12850 BPHYT_RS12855
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -3.3 -6.9 N.D. -0.3
carbon source D-Galactose (C) N.D. -4.0 -5.4 N.D. -0.1
carbon source D-Mannose (C) N.D. -3.7 -5.4 N.D. +0.2
carbon source L-Proline (C) N.D. -3.4 -5.1 N.D. -0.0
carbon source L-Alanine (C) N.D. -4.3 -4.0 N.D. -0.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. -2.4 -5.7 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. -1.9 -5.9 N.D. -0.4
carbon source D-Xylose (C) N.D. -3.3 -4.4 N.D. -0.5
carbon source D-Ribose (C) N.D. -3.9 -4.5 N.D. +0.3
nitrogen source Ammonium chloride (N) N.D. -2.5 -4.7 N.D. -0.9
nitrogen source L-Lysine (N) N.D. -2.4 -4.6 N.D. -1.0
carbon source D-Alanine (C) N.D. -4.3 -3.9 N.D. +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -2.2 -5.2 N.D. -0.6
nitrogen source L-Alanine (N) N.D. -3.4 -3.8 N.D. -0.6
carbon source D-Fructose (C) N.D. -2.6 -5.2 N.D. +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -2.9 -4.1 N.D. -0.7
nutrient Min media with glucose N.D. -3.6 -4.0 N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. -2.0 -4.5 N.D. -1.1
nutrient L-Histidine N.D. -3.9 -3.7 N.D. +0.1
nutrient L-Serine N.D. -4.1 -3.6 N.D. +0.2
carbon source L-Asparagine (C) N.D. -3.1 -4.7 N.D. +0.3
carbon source L-Fucose (C) N.D. -2.9 -4.9 N.D. +0.3
carbon source D-Sorbitol (C) N.D. -3.0 -4.4 N.D. +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -2.4 -5.2 N.D. +0.3
vitamin No vitamins t2 N.D. -3.2 -4.8 N.D. +0.6
nutrient Min media with glucose N.D. -3.5 -4.3 N.D. +0.6
vitamin With vitamins t2 N.D. -2.8 -4.6 N.D. +0.2
carbon source L-Rhamnose (C) N.D. -2.2 -5.1 N.D. +0.2
nutrient L-Serine N.D. -4.1 -3.7 N.D. +1.0
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. -2.2 -4.9 N.D. +0.6
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