Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12745 and BPHYT_RS12750 are separated by 122 nucleotidesBPHYT_RS12750 and BPHYT_RS12755 are separated by 15 nucleotidesBPHYT_RS12755 and BPHYT_RS12760 are separated by 154 nucleotidesBPHYT_RS12760 and BPHYT_RS12765 are separated by 109 nucleotides BPHYT_RS12745: BPHYT_RS12745 - membrane protein, at 2,907,518 to 2,908,261 _RS12745 BPHYT_RS12750: BPHYT_RS12750 - hypothetical protein, at 2,908,384 to 2,908,581 _RS12750 BPHYT_RS12755: BPHYT_RS12755 - 2Fe-2S type ferredoxin, at 2,908,597 to 2,908,938 _RS12755 BPHYT_RS12760: BPHYT_RS12760 - molecular chaperone HscA, at 2,909,093 to 2,910,964 _RS12760 BPHYT_RS12765: BPHYT_RS12765 - Co-chaperone protein HscB homolog, at 2,911,074 to 2,911,601 _RS12765
Group Condition BPHYT_RS12745 BPHYT_RS12750 BPHYT_RS12755 BPHYT_RS12760 BPHYT_RS12765
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 N.D. N.D. N.D. N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.6 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.6 N.D. N.D. N.D. N.D.
carbon source Protocatechuic Acid (C) -0.5 N.D. N.D. N.D. N.D.
nitrogen source L-Serine (N) -0.5 N.D. N.D. N.D. N.D.
carbon source adipate (C) -0.5 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. N.D. N.D. N.D.
phage 24hr PHYTO3 MOI 10 +0.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. N.D. N.D. N.D.
carbon source L-Alanine (C) +0.4 N.D. N.D. N.D. N.D.
carbon source Protocatechuic Acid (C) +0.5 N.D. N.D. N.D. N.D.
phage 36hr PHYTO10 MOI 10 +0.5 N.D. N.D. N.D. N.D.
r2a control R2A control +0.5 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 N.D. N.D. N.D. N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.5 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.6 N.D. N.D. N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. N.D. N.D. N.D.
carbon source D-Glucose (C) +0.6 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. N.D. N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.6 N.D. N.D. N.D. N.D.
temperature LB, 37C +0.6 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 N.D. N.D. N.D. N.D.
phage 36hr PHYTO8 MOI 10 +0.7 N.D. N.D. N.D. N.D.
phage 36hr PHYTO9 MOI 0.1 +0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 N.D. N.D. N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.8 N.D. N.D. N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.9 N.D. N.D. N.D. N.D.
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