Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12735 and BPHYT_RS12740 are separated by 149 nucleotidesBPHYT_RS12740 and BPHYT_RS12745 are separated by 313 nucleotidesBPHYT_RS12745 and BPHYT_RS12750 are separated by 122 nucleotidesBPHYT_RS12750 and BPHYT_RS12755 are separated by 15 nucleotides BPHYT_RS12735: BPHYT_RS12735 - peptide chain release factor 2, at 2,904,752 to 2,905,498 _RS12735 BPHYT_RS12740: BPHYT_RS12740 - lysine--tRNA ligase, at 2,905,648 to 2,907,204 _RS12740 BPHYT_RS12745: BPHYT_RS12745 - membrane protein, at 2,907,518 to 2,908,261 _RS12745 BPHYT_RS12750: BPHYT_RS12750 - hypothetical protein, at 2,908,384 to 2,908,581 _RS12750 BPHYT_RS12755: BPHYT_RS12755 - 2Fe-2S type ferredoxin, at 2,908,597 to 2,908,938 _RS12755
Group Condition BPHYT_RS12735 BPHYT_RS12740 BPHYT_RS12745 BPHYT_RS12750 BPHYT_RS12755
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.8 N.D. N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. -0.6 N.D. N.D.
carbon source Protocatechuic Acid (C) N.D. N.D. -0.5 N.D. N.D.
nitrogen source L-Serine (N) N.D. N.D. -0.5 N.D. N.D.
carbon source adipate (C) N.D. N.D. -0.5 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.4 N.D. N.D.
phage 24hr PHYTO3 MOI 10 N.D. N.D. +0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.4 N.D. N.D.
carbon source L-Alanine (C) N.D. N.D. +0.4 N.D. N.D.
carbon source Protocatechuic Acid (C) N.D. N.D. +0.5 N.D. N.D.
phage 36hr PHYTO10 MOI 10 N.D. N.D. +0.5 N.D. N.D.
r2a control R2A control N.D. N.D. +0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.5 N.D. N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. +0.5 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. N.D. +0.6 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.6 N.D. N.D.
carbon source D-Glucose (C) N.D. N.D. +0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.6 N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. +0.6 N.D. N.D.
temperature LB, 37C N.D. N.D. +0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +0.6 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.7 N.D. N.D.
phage 36hr PHYTO8 MOI 10 N.D. N.D. +0.7 N.D. N.D.
phage 36hr PHYTO9 MOI 0.1 N.D. N.D. +0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.7 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.8 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.9 N.D. N.D.
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