Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS12725 and BPHYT_RS12730 are separated by 52 nucleotidesBPHYT_RS12730 and BPHYT_RS12735 are separated by 618 nucleotidesBPHYT_RS12735 and BPHYT_RS12740 are separated by 149 nucleotidesBPHYT_RS12740 and BPHYT_RS12745 are separated by 313 nucleotides BPHYT_RS12725: BPHYT_RS12725 - regulator, at 2,901,208 to 2,902,374 _RS12725 BPHYT_RS12730: BPHYT_RS12730 - single-stranded DNA exonuclease, at 2,902,427 to 2,904,133 _RS12730 BPHYT_RS12735: BPHYT_RS12735 - peptide chain release factor 2, at 2,904,752 to 2,905,498 _RS12735 BPHYT_RS12740: BPHYT_RS12740 - lysine--tRNA ligase, at 2,905,648 to 2,907,204 _RS12740 BPHYT_RS12745: BPHYT_RS12745 - membrane protein, at 2,907,518 to 2,908,261 _RS12745
Group Condition BPHYT_RS12725 BPHYT_RS12730 BPHYT_RS12735 BPHYT_RS12740 BPHYT_RS12745
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -4.6 -0.0 N.D. N.D. -0.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -4.6 -0.1 N.D. N.D. +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -4.2 +0.3 N.D. N.D. -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -3.6 +0.1 N.D. N.D. +0.0
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.7 +0.2 N.D. N.D. -0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -3.2 -0.0 N.D. N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -2.8 +0.2 N.D. N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -2.2 -0.0 N.D. N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.3 -0.1 N.D. N.D. -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -2.9 +0.1 N.D. N.D. +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.7 +0.1 N.D. N.D. -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -2.5 -0.0 N.D. N.D. +0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -2.5 +0.3 N.D. N.D. +0.0
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -2.3 +0.1 N.D. N.D. +0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -2.3 +0.3 N.D. N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.9 -0.2 N.D. N.D. +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.0 +0.4 N.D. N.D. -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -2.4 +0.3 N.D. N.D. +0.6
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -1.3 -0.6 N.D. N.D. +0.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -2.3 +0.4 N.D. N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.7 +0.1 N.D. N.D. +0.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -1.7 +0.5 N.D. N.D. +0.9
phage 36hr PHYTO2 MOI 1 +1.9 +0.1 N.D. N.D. -0.3
phage 36hr PHYTO3 MOI 1 +2.2 +0.1 N.D. N.D. +0.1
phage 24hr PHYTO1 MOI 10 +1.8 +0.3 N.D. N.D. +0.4
phage 36hr PHYTO2 MOI 1 +2.0 +0.2 N.D. N.D. +0.2
phage 36hr PHYTO10 MOI 10 +1.7 +0.3 N.D. N.D. +0.5
phage 36hr PHYTO3 MOI 1 +2.1 +0.3 N.D. N.D. +0.2
phage 24hr PHYTO3 MOI 10 +2.0 +0.1 N.D. N.D. +0.4
phage 36hr PHYTO8 MOI 10 +1.8 +0.2 N.D. N.D. +0.7
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