Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS12715 and BPHYT_RS12720 overlap by 4 nucleotidesBPHYT_RS12720 and BPHYT_RS12725 are separated by 117 nucleotidesBPHYT_RS12725 and BPHYT_RS12730 are separated by 52 nucleotidesBPHYT_RS12730 and BPHYT_RS12735 are separated by 618 nucleotides BPHYT_RS12715: BPHYT_RS12715 - cell division protein FtsX, at 2,899,643 to 2,900,896 _RS12715 BPHYT_RS12720: BPHYT_RS12720 - hypothetical protein, at 2,900,893 to 2,901,090 _RS12720 BPHYT_RS12725: BPHYT_RS12725 - regulator, at 2,901,208 to 2,902,374 _RS12725 BPHYT_RS12730: BPHYT_RS12730 - single-stranded DNA exonuclease, at 2,902,427 to 2,904,133 _RS12730 BPHYT_RS12735: BPHYT_RS12735 - peptide chain release factor 2, at 2,904,752 to 2,905,498 _RS12735
Group Condition BPHYT_RS12715 BPHYT_RS12720 BPHYT_RS12725 BPHYT_RS12730 BPHYT_RS12735
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. -4.6 -0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -4.6 -0.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -4.2 +0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -3.6 +0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. -3.2 -0.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. -2.9 +0.1 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.7 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -2.8 +0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. -2.5 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -2.3 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -2.2 -0.0 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.3 +0.1 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.5 +0.3 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.4 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -1.9 -0.2 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.3 +0.3 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.3 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -2.0 +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -2.0 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.9 +0.3 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.7 +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -1.7 +0.5 N.D.
phage 24hr PHYTO6 MOI 0.1 N.D. N.D. +1.8 +0.3 N.D.
phage 36hr PHYTO1 MOI 10 N.D. N.D. +1.8 +0.3 N.D.
phage 24hr PHYTO3 MOI 10 N.D. N.D. +2.0 +0.1 N.D.
phage 36hr PHYTO2 MOI 1 N.D. N.D. +2.0 +0.2 N.D.
phage 36hr PHYTO1 MOI 1 N.D. N.D. +1.9 +0.3 N.D.
phage 36hr PHYTO3 MOI 1 N.D. N.D. +2.2 +0.1 N.D.
phage 24hr PHYTO3 MOI 10 N.D. N.D. +2.2 +0.1 N.D.
phage 36hr PHYTO3 MOI 1 N.D. N.D. +2.1 +0.3 N.D.
remove
BPHYT_RS12715
plot		 remove
BPHYT_RS12720
plot		 remove
BPHYT_RS12725		 remove
BPHYT_RS12730
plot		 remove
BPHYT_RS12735
plot