Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS12530 and BPHYT_RS12535 are separated by 281 nucleotidesBPHYT_RS12535 and BPHYT_RS12540 are separated by 44 nucleotidesBPHYT_RS12540 and BPHYT_RS12545 are separated by 12 nucleotidesBPHYT_RS12545 and BPHYT_RS12550 are separated by 49 nucleotides BPHYT_RS12530: BPHYT_RS12530 - ATP phosphoribosyltransferase regulatory subunit, at 2,860,864 to 2,862,015 _RS12530 BPHYT_RS12535: BPHYT_RS12535 - membrane protein, at 2,862,297 to 2,862,488 _RS12535 BPHYT_RS12540: BPHYT_RS12540 - membrane protein, at 2,862,533 to 2,863,435 _RS12540 BPHYT_RS12545: BPHYT_RS12545 - membrane protein, at 2,863,448 to 2,864,848 _RS12545 BPHYT_RS12550: BPHYT_RS12550 - GTP-binding protein HflX, at 2,864,898 to 2,866,070 _RS12550
Group Condition BPHYT_RS12530 BPHYT_RS12535 BPHYT_RS12540 BPHYT_RS12545 BPHYT_RS12550
carbon source Sebacic (C) -6.7 -0.2 N.D. N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -3.3 -1.1 N.D. N.D. -2.8
carbon source 2-Deoxy-D-Ribose (C) -3.9 -0.2 N.D. N.D. -2.5
carbon source Malonic (C) -4.6 +0.2 N.D. N.D. -2.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -2.6 -2.6 N.D. N.D. -1.3
carbon source L-Proline (C) -5.7 -0.5 N.D. N.D. -0.3
nitrogen source D-Alanine (N) -5.0 +0.2 N.D. N.D. -1.5
nitrogen source Ammonium chloride (N) -5.7 +0.3 N.D. N.D. -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.3 -0.1 N.D. N.D. -2.8
carbon source D-Xylose (C) -4.4 -2.2 N.D. N.D. +0.5
nutrient Min media with glucose -5.8 -0.2 N.D. N.D. -0.1
nitrogen source L-Asparagine (N) -5.2 -0.3 N.D. N.D. -0.6
carbon source 2-Deoxy-D-ribonic lithium salt (C) -1.7 -0.3 N.D. N.D. -4.0
carbon source D-Glucose (C) -5.4 +0.3 N.D. N.D. -0.8
nitrogen source L-Citrulline (N) -5.0 -0.8 N.D. N.D. +0.0
nitrogen source L-Proline (N) -4.5 +0.2 N.D. N.D. -1.5
supernatant control Vogels_fungal_media 0.1X -6.0 +1.2 N.D. N.D. -0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -5.8 +0.4 N.D. N.D. +0.3
carbon source Tween 20 (C) -7.0 +0.6 N.D. N.D. +1.6
carbon source L-Lactate (C) -5.4 +0.6 N.D. N.D. +0.1
nitrogen source L-Alanine (N) -4.2 +0.7 N.D. N.D. -1.0
supernatant control Vogels_fungal_media 0.1X -5.2 +0.6 N.D. N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -4.4 +1.2 N.D. N.D. -1.0
supernatant control Vogels_fungal_media; pH 5.5 -3.9 -1.4 N.D. N.D. +1.1
nitrogen source L-Serine (N) -5.4 +1.5 N.D. N.D. -0.4
carbon source succinate (C) -5.2 +0.7 N.D. N.D. +0.4
carbon source D-Sorbitol (C) -5.1 +0.9 N.D. N.D. +0.8
carbon source L-Tryptophan (C) -4.5 +0.8 N.D. N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -4.7 +0.7 N.D. N.D. +1.5
carbon source Malonic (C) -4.2 +2.3 N.D. N.D. -0.0
remove
BPHYT_RS12530
plot		 remove
BPHYT_RS12535
plot		 remove
BPHYT_RS12540		 remove
BPHYT_RS12545
plot		 remove
BPHYT_RS12550
plot